Hb_002997_100

Information

Type -
Description -
Location Contig2997: 84409-89298
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10680g
description hypothetical protein
nr
ID KDP27663.1
description hypothetical protein JCGZ_19555 [Jatropha curcas]
swissprot
ID Q9SYM1
description Mechanosensitive ion channel protein 6 OS=Arabidopsis thaliana GN=MSL6 PE=1 SV=1
trembl
ID A0A067JXY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19555 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mechanosensitive ion channel protein 6-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31302: 87426-87563 , PASA_asmbl_31303: 87811-89211 , PASA_asmbl_31304: 88353-88851
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002997_100 0.0 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
2 Hb_022256_040 0.0582600362 - - PREDICTED: probable E3 ubiquitin-protein ligase rbrA isoform X2 [Jatropha curcas]
3 Hb_182026_010 0.0833585975 - - hypothetical protein CICLE_v10003487mg, partial [Citrus clementina]
4 Hb_000078_130 0.0908365781 - - -
5 Hb_000230_330 0.0976848906 - - PREDICTED: calcium-binding protein 39-like [Populus euphratica]
6 Hb_000733_060 0.0978361823 - - PREDICTED: protein GUCD1 isoform X1 [Jatropha curcas]
7 Hb_012654_010 0.1036309488 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105629849 [Jatropha curcas]
8 Hb_002874_070 0.1036721917 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
9 Hb_011344_010 0.1051563143 - - PREDICTED: NADH dehydrogenase (ubiquinone) complex I, assembly factor 6 [Jatropha curcas]
10 Hb_182026_020 0.1060532915 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
11 Hb_000107_100 0.1064921505 - - hypothetical protein JCGZ_16208 [Jatropha curcas]
12 Hb_001341_040 0.1066114342 - - hypothetical protein JCGZ_05578 [Jatropha curcas]
13 Hb_002027_130 0.1067124597 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
14 Hb_000340_510 0.1081069593 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
15 Hb_002508_020 0.1091760582 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-1 [Jatropha curcas]
16 Hb_000049_040 0.1094759105 - - PREDICTED: uncharacterized protein LOC105644475 [Jatropha curcas]
17 Hb_001584_110 0.1094860165 - - PREDICTED: importin subunit alpha-4 isoform X2 [Jatropha curcas]
18 Hb_005288_160 0.1099453874 - - PREDICTED: uncharacterized protein LOC105647746 isoform X1 [Jatropha curcas]
19 Hb_023226_060 0.1104078651 - - unnamed protein product [Vitis vinifera]
20 Hb_001252_080 0.1106587417 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]

Gene co-expression network

sample Hb_002997_100 Hb_002997_100 Hb_022256_040 Hb_022256_040 Hb_002997_100--Hb_022256_040 Hb_182026_010 Hb_182026_010 Hb_002997_100--Hb_182026_010 Hb_000078_130 Hb_000078_130 Hb_002997_100--Hb_000078_130 Hb_000230_330 Hb_000230_330 Hb_002997_100--Hb_000230_330 Hb_000733_060 Hb_000733_060 Hb_002997_100--Hb_000733_060 Hb_012654_010 Hb_012654_010 Hb_002997_100--Hb_012654_010 Hb_002874_070 Hb_002874_070 Hb_022256_040--Hb_002874_070 Hb_002631_050 Hb_002631_050 Hb_022256_040--Hb_002631_050 Hb_022256_040--Hb_000733_060 Hb_022256_040--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_022256_040--Hb_001584_110 Hb_000340_510 Hb_000340_510 Hb_182026_010--Hb_000340_510 Hb_182026_010--Hb_022256_040 Hb_182026_010--Hb_002631_050 Hb_002818_040 Hb_002818_040 Hb_182026_010--Hb_002818_040 Hb_006029_010 Hb_006029_010 Hb_182026_010--Hb_006029_010 Hb_003581_140 Hb_003581_140 Hb_000078_130--Hb_003581_140 Hb_001454_060 Hb_001454_060 Hb_000078_130--Hb_001454_060 Hb_002014_080 Hb_002014_080 Hb_000078_130--Hb_002014_080 Hb_000490_030 Hb_000490_030 Hb_000078_130--Hb_000490_030 Hb_000078_130--Hb_000230_330 Hb_006091_030 Hb_006091_030 Hb_000078_130--Hb_006091_030 Hb_000230_330--Hb_001584_110 Hb_000390_060 Hb_000390_060 Hb_000230_330--Hb_000390_060 Hb_001504_160 Hb_001504_160 Hb_000230_330--Hb_001504_160 Hb_000462_150 Hb_000462_150 Hb_000230_330--Hb_000462_150 Hb_003434_060 Hb_003434_060 Hb_000230_330--Hb_003434_060 Hb_000076_080 Hb_000076_080 Hb_000230_330--Hb_000076_080 Hb_005288_160 Hb_005288_160 Hb_000733_060--Hb_005288_160 Hb_023226_060 Hb_023226_060 Hb_000733_060--Hb_023226_060 Hb_000733_060--Hb_002631_050 Hb_000768_030 Hb_000768_030 Hb_000733_060--Hb_000768_030 Hb_001001_160 Hb_001001_160 Hb_000733_060--Hb_001001_160 Hb_012654_010--Hb_001504_160 Hb_000107_100 Hb_000107_100 Hb_012654_010--Hb_000107_100 Hb_000139_250 Hb_000139_250 Hb_012654_010--Hb_000139_250 Hb_001057_010 Hb_001057_010 Hb_012654_010--Hb_001057_010 Hb_005214_160 Hb_005214_160 Hb_012654_010--Hb_005214_160 Hb_002701_080 Hb_002701_080 Hb_012654_010--Hb_002701_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.5559 3.31787 3.11857 4.0003 19.5385 13.8272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.83585 5.93307 12.1259 3.72211 1.5911

CAGE analysis