Hb_002997_110

Information

Type transcription factor
Description TF Family: Orphans
Location Contig2997: 89495-92872
Sequence    

Annotation

kegg
ID rcu:RCOM_0107360
description zinc finger protein, putative
nr
ID XP_012084355.1
description PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
swissprot
ID Q9SYM2
description B-box zinc finger protein 22 OS=Arabidopsis thaliana GN=BBX22 PE=1 SV=2
trembl
ID A0A067JXZ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19560 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable salt tolerance-like protein at1g78600

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31305: 89481-92922 , PASA_asmbl_31306: 91155-92012
cDNA
(Sanger)
(ID:Location)		 022_L23.ab1: 92659-92872

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002997_110 0.0 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
2 Hb_002609_290 0.115671889 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
3 Hb_001863_340 0.1306337305 - - PREDICTED: probable pectin methyltransferase QUA2 [Jatropha curcas]
4 Hb_011381_070 0.1387924982 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
5 Hb_007224_010 0.1434528092 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
6 Hb_001386_020 0.1446995253 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000035_490 0.1452806779 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
8 Hb_021409_110 0.1481186703 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_001627_010 0.1538532093 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
10 Hb_007193_030 0.1553082249 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
11 Hb_001366_390 0.1576252348 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
12 Hb_010812_060 0.158157594 - - PREDICTED: uncharacterized protein LOC105649158 [Jatropha curcas]
13 Hb_011918_030 0.1586087751 - - PREDICTED: nudix hydrolase 4 [Jatropha curcas]
14 Hb_003106_240 0.1600884257 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
15 Hb_000318_410 0.1611394979 - - PREDICTED: extra-large guanine nucleotide-binding protein 1-like [Jatropha curcas]
16 Hb_101133_040 0.1614397979 - - PREDICTED: nudix hydrolase 18, mitochondrial-like [Jatropha curcas]
17 Hb_002639_130 0.1632835168 - - hypothetical protein JCGZ_08129 [Jatropha curcas]
18 Hb_002030_110 0.163294409 - - PREDICTED: RING-H2 finger protein ATL32-like [Jatropha curcas]
19 Hb_000366_050 0.1636126033 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
20 Hb_054232_020 0.1641649562 - - Potassium channel SKOR, putative [Ricinus communis]

Gene co-expression network

sample Hb_002997_110 Hb_002997_110 Hb_002609_290 Hb_002609_290 Hb_002997_110--Hb_002609_290 Hb_001863_340 Hb_001863_340 Hb_002997_110--Hb_001863_340 Hb_011381_070 Hb_011381_070 Hb_002997_110--Hb_011381_070 Hb_007224_010 Hb_007224_010 Hb_002997_110--Hb_007224_010 Hb_001386_020 Hb_001386_020 Hb_002997_110--Hb_001386_020 Hb_000035_490 Hb_000035_490 Hb_002997_110--Hb_000035_490 Hb_002609_290--Hb_011381_070 Hb_000366_050 Hb_000366_050 Hb_002609_290--Hb_000366_050 Hb_001158_120 Hb_001158_120 Hb_002609_290--Hb_001158_120 Hb_010812_060 Hb_010812_060 Hb_002609_290--Hb_010812_060 Hb_001627_010 Hb_001627_010 Hb_002609_290--Hb_001627_010 Hb_001863_340--Hb_000035_490 Hb_001021_100 Hb_001021_100 Hb_001863_340--Hb_001021_100 Hb_002030_110 Hb_002030_110 Hb_001863_340--Hb_002030_110 Hb_000748_110 Hb_000748_110 Hb_001863_340--Hb_000748_110 Hb_021409_110 Hb_021409_110 Hb_001863_340--Hb_021409_110 Hb_001250_040 Hb_001250_040 Hb_001863_340--Hb_001250_040 Hb_011381_070--Hb_000366_050 Hb_011381_070--Hb_001158_120 Hb_011381_070--Hb_000035_490 Hb_001294_040 Hb_001294_040 Hb_011381_070--Hb_001294_040 Hb_132840_020 Hb_132840_020 Hb_011381_070--Hb_132840_020 Hb_007224_010--Hb_001627_010 Hb_007224_010--Hb_021409_110 Hb_007224_010--Hb_132840_020 Hb_001519_060 Hb_001519_060 Hb_007224_010--Hb_001519_060 Hb_000086_640 Hb_000086_640 Hb_007224_010--Hb_000086_640 Hb_000928_250 Hb_000928_250 Hb_007224_010--Hb_000928_250 Hb_001386_020--Hb_000086_640 Hb_000753_140 Hb_000753_140 Hb_001386_020--Hb_000753_140 Hb_001386_020--Hb_132840_020 Hb_001386_020--Hb_000035_490 Hb_002383_050 Hb_002383_050 Hb_001386_020--Hb_002383_050 Hb_001386_020--Hb_011381_070 Hb_000035_490--Hb_000086_640 Hb_000035_490--Hb_001021_100 Hb_000035_490--Hb_132840_020 Hb_011671_110 Hb_011671_110 Hb_000035_490--Hb_011671_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.54509 28.677 44.1963 13.5356 3.41381 1.37898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.0843 1.13741 0.44573 3.03491 23.7268

CAGE analysis