Hb_002997_160

Information

Type -
Description -
Location Contig2997: 131068-161716
Sequence    

Annotation

kegg
ID rcu:RCOM_0265980
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_012092504.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
swissprot
ID O22207
description Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2
trembl
ID A0A067JMD6
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_03783 PE=3 SV=1
Gene Ontology
ID GO:0004843
description ubiquitin carboxyl-terminal hydrolase 5 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31312: 134625-141765 , PASA_asmbl_31313: 140924-142469 , PASA_asmbl_31314: 131377-141765 , PASA_asmbl_31315: 142901-151000 , PASA_asmbl_31317: 151109-161435
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002997_160 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X2 [Jatropha curcas]
2 Hb_001231_030 0.0774064657 - - PREDICTED: zinc finger BED domain-containing protein DAYSLEEPER-like [Jatropha curcas]
3 Hb_000753_100 0.0785023025 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]
4 Hb_001117_190 0.0873113372 transcription factor TF Family: FAR1 FAR1-related sequence 11 [Theobroma cacao]
5 Hb_011909_060 0.0934262643 - - PREDICTED: zinc finger protein CONSTANS-LIKE 1 [Jatropha curcas]
6 Hb_080147_040 0.0951243438 - - hypothetical protein JCGZ_07266 [Jatropha curcas]
7 Hb_003929_140 0.0998083077 - - DNA binding protein, putative [Ricinus communis]
8 Hb_003430_030 0.1014529815 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
9 Hb_005054_190 0.1032815656 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
10 Hb_002902_020 0.1039420833 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
11 Hb_004629_010 0.1051929272 - - PREDICTED: AP-3 complex subunit delta [Jatropha curcas]
12 Hb_000363_280 0.1055514562 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: angiomotin [Cucumis sativus]
13 Hb_007229_040 0.1056249674 - - PREDICTED: protein ARABIDILLO 1-like [Jatropha curcas]
14 Hb_002066_080 0.1062633098 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
15 Hb_000045_320 0.106796597 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
16 Hb_003540_160 0.107045932 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]
17 Hb_005291_040 0.1076671883 - - PREDICTED: gamma-gliadin [Jatropha curcas]
18 Hb_000024_120 0.1088564451 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
19 Hb_005188_060 0.109060666 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
20 Hb_000625_120 0.1093542753 - - PREDICTED: calcium-dependent protein kinase 28 [Jatropha curcas]

Gene co-expression network

sample Hb_002997_160 Hb_002997_160 Hb_001231_030 Hb_001231_030 Hb_002997_160--Hb_001231_030 Hb_000753_100 Hb_000753_100 Hb_002997_160--Hb_000753_100 Hb_001117_190 Hb_001117_190 Hb_002997_160--Hb_001117_190 Hb_011909_060 Hb_011909_060 Hb_002997_160--Hb_011909_060 Hb_080147_040 Hb_080147_040 Hb_002997_160--Hb_080147_040 Hb_003929_140 Hb_003929_140 Hb_002997_160--Hb_003929_140 Hb_006787_060 Hb_006787_060 Hb_001231_030--Hb_006787_060 Hb_002902_020 Hb_002902_020 Hb_001231_030--Hb_002902_020 Hb_004629_010 Hb_004629_010 Hb_001231_030--Hb_004629_010 Hb_005104_010 Hb_005104_010 Hb_001231_030--Hb_005104_010 Hb_001231_030--Hb_000753_100 Hb_000032_010 Hb_000032_010 Hb_000753_100--Hb_000032_010 Hb_003540_160 Hb_003540_160 Hb_000753_100--Hb_003540_160 Hb_003040_020 Hb_003040_020 Hb_000753_100--Hb_003040_020 Hb_000753_100--Hb_001117_190 Hb_140049_020 Hb_140049_020 Hb_000753_100--Hb_140049_020 Hb_005188_060 Hb_005188_060 Hb_000753_100--Hb_005188_060 Hb_001117_190--Hb_003540_160 Hb_007229_040 Hb_007229_040 Hb_001117_190--Hb_007229_040 Hb_000317_150 Hb_000317_150 Hb_001117_190--Hb_000317_150 Hb_005539_190 Hb_005539_190 Hb_001117_190--Hb_005539_190 Hb_001117_190--Hb_005188_060 Hb_000363_280 Hb_000363_280 Hb_011909_060--Hb_000363_280 Hb_000120_420 Hb_000120_420 Hb_011909_060--Hb_000120_420 Hb_009771_100 Hb_009771_100 Hb_011909_060--Hb_009771_100 Hb_031711_010 Hb_031711_010 Hb_011909_060--Hb_031711_010 Hb_001141_370 Hb_001141_370 Hb_011909_060--Hb_001141_370 Hb_000300_360 Hb_000300_360 Hb_080147_040--Hb_000300_360 Hb_009620_030 Hb_009620_030 Hb_080147_040--Hb_009620_030 Hb_001953_150 Hb_001953_150 Hb_080147_040--Hb_001953_150 Hb_006452_160 Hb_006452_160 Hb_080147_040--Hb_006452_160 Hb_080147_040--Hb_005188_060 Hb_080147_040--Hb_140049_020 Hb_000661_020 Hb_000661_020 Hb_003929_140--Hb_000661_020 Hb_002022_070 Hb_002022_070 Hb_003929_140--Hb_002022_070 Hb_000028_510 Hb_000028_510 Hb_003929_140--Hb_000028_510 Hb_003929_140--Hb_004629_010 Hb_003929_140--Hb_000753_100 Hb_003929_140--Hb_001231_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.9293 23.1936 13.6273 4.87185 16.785 18.6885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.07821 3.13684 5.23587 7.28462 6.21679

CAGE analysis