Hb_002999_020

Information

Type -
Description -
Location Contig2999: 26055-27123
Sequence    

Annotation

kegg
ID rcu:RCOM_0836490
description ribonuclease t2, putative (EC:3.1.27.1)
nr
ID XP_012067651.1
description PREDICTED: ribonuclease 3-like [Jatropha curcas]
swissprot
ID P42815
description Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=2 SV=1
trembl
ID A0A067L9R7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15612 PE=3 SV=1
Gene Ontology
ID GO:0003723
description ribonuclease 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31336: 26023-27249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002999_020 0.0 - - PREDICTED: ribonuclease 3-like [Jatropha curcas]
2 Hb_153258_030 0.0381066838 - - hypothetical protein RCOM_0853150 [Ricinus communis]
3 Hb_000742_040 0.044878348 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
4 Hb_000796_110 0.0516902709 - - PREDICTED: probable pectinesterase 53 [Populus euphratica]
5 Hb_001416_120 0.0649821868 - - caspase, putative [Ricinus communis]
6 Hb_124677_070 0.0658281452 - - PREDICTED: DNA-damage-repair/toleration protein DRT100-like [Jatropha curcas]
7 Hb_016734_110 0.0686781798 transcription factor TF Family: MYB-related hypothetical protein POPTR_0005s12390g [Populus trichocarpa]
8 Hb_000802_040 0.0699069733 - - PREDICTED: probable inositol transporter 2 [Jatropha curcas]
9 Hb_009662_040 0.0753261944 - - PREDICTED: uncharacterized protein LOC105114791 [Populus euphratica]
10 Hb_090210_010 0.079596809 - - neutral alpha-glucosidase ab precursor, putative [Ricinus communis]
11 Hb_000815_010 0.0856330442 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105117338 [Populus euphratica]
12 Hb_001496_150 0.0875946176 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
13 Hb_004693_040 0.0894094068 - - -
14 Hb_010327_040 0.0919378619 - - hypothetical protein POPTR_0004s17300g [Populus trichocarpa]
15 Hb_000666_040 0.0930077958 - - PREDICTED: MLP-like protein 34 [Vitis vinifera]
16 Hb_001623_560 0.0933425733 - - late embryogenesis abundant protein group 9 protein [Arachis hypogaea]
17 Hb_026196_020 0.0938010468 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
18 Hb_000731_180 0.0976557026 - - hypothetical protein POPTR_0004s01820g [Populus trichocarpa]
19 Hb_018910_010 0.0979001788 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X3 [Citrus sinensis]
20 Hb_005666_010 0.1042146622 - - PREDICTED: uncharacterized protein LOC105643999 [Jatropha curcas]

Gene co-expression network

sample Hb_002999_020 Hb_002999_020 Hb_153258_030 Hb_153258_030 Hb_002999_020--Hb_153258_030 Hb_000742_040 Hb_000742_040 Hb_002999_020--Hb_000742_040 Hb_000796_110 Hb_000796_110 Hb_002999_020--Hb_000796_110 Hb_001416_120 Hb_001416_120 Hb_002999_020--Hb_001416_120 Hb_124677_070 Hb_124677_070 Hb_002999_020--Hb_124677_070 Hb_016734_110 Hb_016734_110 Hb_002999_020--Hb_016734_110 Hb_153258_030--Hb_000796_110 Hb_090210_010 Hb_090210_010 Hb_153258_030--Hb_090210_010 Hb_001496_150 Hb_001496_150 Hb_153258_030--Hb_001496_150 Hb_153258_030--Hb_001416_120 Hb_153258_030--Hb_000742_040 Hb_000742_040--Hb_124677_070 Hb_000742_040--Hb_000796_110 Hb_000742_040--Hb_016734_110 Hb_000802_040 Hb_000802_040 Hb_000742_040--Hb_000802_040 Hb_000796_110--Hb_001416_120 Hb_000796_110--Hb_090210_010 Hb_000934_120 Hb_000934_120 Hb_000796_110--Hb_000934_120 Hb_001416_120--Hb_000802_040 Hb_001416_120--Hb_000742_040 Hb_001416_120--Hb_124677_070 Hb_026196_020 Hb_026196_020 Hb_124677_070--Hb_026196_020 Hb_124677_070--Hb_000802_040 Hb_188742_010 Hb_188742_010 Hb_124677_070--Hb_188742_010 Hb_010327_040 Hb_010327_040 Hb_124677_070--Hb_010327_040 Hb_000666_040 Hb_000666_040 Hb_016734_110--Hb_000666_040 Hb_001568_040 Hb_001568_040 Hb_016734_110--Hb_001568_040 Hb_016734_110--Hb_153258_030 Hb_016734_110--Hb_001496_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.283211 12.6713 46.9652 0 0.0486115
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.21541 3.25674

CAGE analysis