Hb_002999_040

Information

Type -
Description -
Location Contig2999: 56609-57262
Sequence    

Annotation

kegg
ID rcu:RCOM_0836610
description hypothetical protein
nr
ID XP_002522445.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8X6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0836610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002999_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001818_030 0.032649597 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
3 Hb_003581_180 0.2441286431 - - Pectate lyase precursor, putative [Ricinus communis]
4 Hb_000856_160 0.2650702422 - - -
5 Hb_152362_010 0.282448116 - - Gamma-glutamyl-gamma-aminobutyrate hydrolase, putative [Ricinus communis]
6 Hb_000925_040 0.2995129385 - - kinase, putative [Ricinus communis]
7 Hb_003659_020 0.3081032878 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
8 Hb_008035_050 0.3106184099 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
9 Hb_015475_010 0.3140016879 - - hypothetical protein VITISV_034342 [Vitis vinifera]
10 Hb_139691_010 0.3156499153 - - -
11 Hb_002685_050 0.320501547 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
12 Hb_000599_320 0.3258101785 - - hypothetical protein JCGZ_17662 [Jatropha curcas]
13 Hb_000392_290 0.3436031293 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
14 Hb_000010_450 0.3500349966 - - purine permease, putative [Ricinus communis]
15 Hb_000125_220 0.3512169226 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 13 [Jatropha curcas]
16 Hb_000025_170 0.3597778125 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002391_100 0.366580475 - - hypothetical protein POPTR_0007s09360g [Populus trichocarpa]
18 Hb_014068_020 0.3686153158 - - PREDICTED: uncharacterized protein LOC105628343 [Jatropha curcas]
19 Hb_098785_010 0.370090753 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
20 Hb_001789_170 0.3711342447 - - hypothetical protein JCGZ_08269 [Jatropha curcas]

Gene co-expression network

sample Hb_002999_040 Hb_002999_040 Hb_001818_030 Hb_001818_030 Hb_002999_040--Hb_001818_030 Hb_003581_180 Hb_003581_180 Hb_002999_040--Hb_003581_180 Hb_000856_160 Hb_000856_160 Hb_002999_040--Hb_000856_160 Hb_152362_010 Hb_152362_010 Hb_002999_040--Hb_152362_010 Hb_000925_040 Hb_000925_040 Hb_002999_040--Hb_000925_040 Hb_003659_020 Hb_003659_020 Hb_002999_040--Hb_003659_020 Hb_001818_030--Hb_003581_180 Hb_001818_030--Hb_000856_160 Hb_001818_030--Hb_000925_040 Hb_001818_030--Hb_152362_010 Hb_015475_010 Hb_015475_010 Hb_001818_030--Hb_015475_010 Hb_000025_170 Hb_000025_170 Hb_003581_180--Hb_000025_170 Hb_002301_090 Hb_002301_090 Hb_003581_180--Hb_002301_090 Hb_000179_260 Hb_000179_260 Hb_003581_180--Hb_000179_260 Hb_004228_060 Hb_004228_060 Hb_003581_180--Hb_004228_060 Hb_000856_160--Hb_003659_020 Hb_008035_050 Hb_008035_050 Hb_000856_160--Hb_008035_050 Hb_139691_010 Hb_139691_010 Hb_000856_160--Hb_139691_010 Hb_000392_290 Hb_000392_290 Hb_000856_160--Hb_000392_290 Hb_001789_170 Hb_001789_170 Hb_000856_160--Hb_001789_170 Hb_000264_220 Hb_000264_220 Hb_152362_010--Hb_000264_220 Hb_006907_090 Hb_006907_090 Hb_152362_010--Hb_006907_090 Hb_000440_030 Hb_000440_030 Hb_152362_010--Hb_000440_030 Hb_002498_130 Hb_002498_130 Hb_152362_010--Hb_002498_130 Hb_000781_050 Hb_000781_050 Hb_152362_010--Hb_000781_050 Hb_012092_100 Hb_012092_100 Hb_000925_040--Hb_012092_100 Hb_000010_300 Hb_000010_300 Hb_000925_040--Hb_000010_300 Hb_000925_040--Hb_015475_010 Hb_002631_190 Hb_002631_190 Hb_000925_040--Hb_002631_190 Hb_000320_260 Hb_000320_260 Hb_000925_040--Hb_000320_260 Hb_000302_210 Hb_000302_210 Hb_000925_040--Hb_000302_210 Hb_003659_020--Hb_008035_050 Hb_003659_020--Hb_139691_010 Hb_003659_020--Hb_000392_290 Hb_003659_020--Hb_001789_170 Hb_003659_020--Hb_002498_130 Hb_003659_020--Hb_000781_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.26623 0.0790845 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.247758 0 0

CAGE analysis