Hb_002999_050

Information

Type -
Description -
Location Contig2999: 57745-59580
Sequence    

Annotation

kegg
ID rcu:RCOM_0836620
description 50S ribosomal protein L18, chloroplast precursor, putative
nr
ID XP_002522446.1
description 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9SX68
description 50S ribosomal protein L18, chloroplastic OS=Arabidopsis thaliana GN=RPL18 PE=2 SV=1
trembl
ID B9S8X7
description 50S ribosomal protein L18, chloroplast, putative OS=Ricinus communis GN=RCOM_0836620 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31339: 58434-59365 , PASA_asmbl_31340: 59884-61336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002999_050 0.0 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
2 Hb_076626_010 0.0637510331 - - conserved hypothetical protein [Ricinus communis]
3 Hb_010672_070 0.0701513834 - - hypothetical protein ZEAMMB73_607937, partial [Zea mays]
4 Hb_003579_030 0.07304471 - - phosphatase 2C family protein [Populus trichocarpa]
5 Hb_001300_040 0.0777281508 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
6 Hb_005590_020 0.0807428625 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
7 Hb_002876_120 0.0840664938 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
8 Hb_003455_040 0.0856151774 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
9 Hb_000933_160 0.0889892611 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
10 Hb_001634_040 0.0889913624 transcription factor TF Family: NF-YC DNA polymerase epsilon subunit, putative [Ricinus communis]
11 Hb_001633_030 0.0917960723 - - -
12 Hb_003893_050 0.0966022681 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
13 Hb_005511_160 0.0970231068 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
14 Hb_003994_040 0.0971399057 - - -
15 Hb_003203_040 0.0973939714 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
16 Hb_007575_070 0.0980385394 - - Histone H3.2 [Glycine soja]
17 Hb_004375_140 0.0988796434 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
18 Hb_003376_030 0.0990238389 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
19 Hb_000012_100 0.1011770924 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
20 Hb_010672_060 0.1016222751 - - gaba(A) receptor-associated protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002999_050 Hb_002999_050 Hb_076626_010 Hb_076626_010 Hb_002999_050--Hb_076626_010 Hb_010672_070 Hb_010672_070 Hb_002999_050--Hb_010672_070 Hb_003579_030 Hb_003579_030 Hb_002999_050--Hb_003579_030 Hb_001300_040 Hb_001300_040 Hb_002999_050--Hb_001300_040 Hb_005590_020 Hb_005590_020 Hb_002999_050--Hb_005590_020 Hb_002876_120 Hb_002876_120 Hb_002999_050--Hb_002876_120 Hb_076626_010--Hb_010672_070 Hb_076626_010--Hb_005590_020 Hb_000933_160 Hb_000933_160 Hb_076626_010--Hb_000933_160 Hb_001158_230 Hb_001158_230 Hb_076626_010--Hb_001158_230 Hb_003893_050 Hb_003893_050 Hb_076626_010--Hb_003893_050 Hb_010672_070--Hb_005590_020 Hb_003455_040 Hb_003455_040 Hb_010672_070--Hb_003455_040 Hb_003203_040 Hb_003203_040 Hb_010672_070--Hb_003203_040 Hb_010672_070--Hb_000933_160 Hb_003579_030--Hb_002876_120 Hb_002097_060 Hb_002097_060 Hb_003579_030--Hb_002097_060 Hb_020301_040 Hb_020301_040 Hb_003579_030--Hb_020301_040 Hb_001616_030 Hb_001616_030 Hb_003579_030--Hb_001616_030 Hb_001633_030 Hb_001633_030 Hb_003579_030--Hb_001633_030 Hb_000453_090 Hb_000453_090 Hb_001300_040--Hb_000453_090 Hb_000510_110 Hb_000510_110 Hb_001300_040--Hb_000510_110 Hb_001300_040--Hb_010672_070 Hb_001780_040 Hb_001780_040 Hb_001300_040--Hb_001780_040 Hb_000029_200 Hb_000029_200 Hb_001300_040--Hb_000029_200 Hb_007944_040 Hb_007944_040 Hb_005590_020--Hb_007944_040 Hb_001268_140 Hb_001268_140 Hb_005590_020--Hb_001268_140 Hb_000212_260 Hb_000212_260 Hb_005590_020--Hb_000212_260 Hb_007594_120 Hb_007594_120 Hb_002876_120--Hb_007594_120 Hb_002876_120--Hb_020301_040 Hb_001157_010 Hb_001157_010 Hb_002876_120--Hb_001157_010 Hb_000012_100 Hb_000012_100 Hb_002876_120--Hb_000012_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.48013 1.96098 3.97898 2.62574 4.73219 5.27549
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7495 23.4381 12.8532 2.25338 3.75224

CAGE analysis