Hb_002999_070

Information

Type -
Description -
Location Contig2999: 61010-62778
Sequence    

Annotation

kegg
ID rcu:RCOM_0836640
description glucose-methanol-choline (gmc) oxidoreductase, putative (EC:4.1.2.10)
nr
ID XP_002522448.1
description glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
swissprot
ID Q9S746
description Protein HOTHEAD OS=Arabidopsis thaliana GN=HTH PE=1 SV=1
trembl
ID B9S8X9
description Glucose-methanol-choline (Gmc) oxidoreductase, putative OS=Ricinus communis GN=RCOM_0836640 PE=3 SV=1
Gene Ontology
ID GO:0016614
description protein hothead-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31340: 59884-61336 , PASA_asmbl_31342: 61758-62086 , PASA_asmbl_31343: 62110-62337
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002999_070 0.0 - - glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis]
2 Hb_000270_380 0.117779301 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
3 Hb_001486_280 0.1196914062 - - hypothetical protein RCOM_1321910 [Ricinus communis]
4 Hb_002485_010 0.1220636489 - - PREDICTED: extensin [Jatropha curcas]
5 Hb_004375_120 0.1235165473 - - PREDICTED: dnaJ homolog subfamily B member 3-like [Jatropha curcas]
6 Hb_000345_550 0.1256795327 - - PREDICTED: uncharacterized protein LOC105629456 [Jatropha curcas]
7 Hb_001951_080 0.1348033238 - - O-acetyltransferase, putative [Ricinus communis]
8 Hb_001699_080 0.1370585779 - - unnamed protein product [Coffea canephora]
9 Hb_003893_130 0.1384318214 - - metal ion binding protein, putative [Ricinus communis]
10 Hb_015934_090 0.1388640855 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
11 Hb_012098_160 0.1394028438 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]
12 Hb_003032_030 0.1402553788 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
13 Hb_009023_010 0.1407264372 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
14 Hb_003399_110 0.1449380321 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003929_240 0.1450525812 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
16 Hb_009785_030 0.146674511 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
17 Hb_000620_040 0.148333438 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_000000_050 0.1505002692 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004242_090 0.1506507735 - - hypothetical protein JCGZ_00767 [Jatropha curcas]
20 Hb_000358_060 0.1524676211 - - PREDICTED: pathogenesis-related protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_002999_070 Hb_002999_070 Hb_000270_380 Hb_000270_380 Hb_002999_070--Hb_000270_380 Hb_001486_280 Hb_001486_280 Hb_002999_070--Hb_001486_280 Hb_002485_010 Hb_002485_010 Hb_002999_070--Hb_002485_010 Hb_004375_120 Hb_004375_120 Hb_002999_070--Hb_004375_120 Hb_000345_550 Hb_000345_550 Hb_002999_070--Hb_000345_550 Hb_001951_080 Hb_001951_080 Hb_002999_070--Hb_001951_080 Hb_009023_010 Hb_009023_010 Hb_000270_380--Hb_009023_010 Hb_012098_160 Hb_012098_160 Hb_000270_380--Hb_012098_160 Hb_000270_380--Hb_001486_280 Hb_015561_010 Hb_015561_010 Hb_000270_380--Hb_015561_010 Hb_001512_130 Hb_001512_130 Hb_000270_380--Hb_001512_130 Hb_000336_290 Hb_000336_290 Hb_000270_380--Hb_000336_290 Hb_001486_280--Hb_012098_160 Hb_001486_280--Hb_009023_010 Hb_001486_280--Hb_002485_010 Hb_000904_120 Hb_000904_120 Hb_001486_280--Hb_000904_120 Hb_012484_050 Hb_012484_050 Hb_001486_280--Hb_012484_050 Hb_003032_030 Hb_003032_030 Hb_002485_010--Hb_003032_030 Hb_001032_020 Hb_001032_020 Hb_002485_010--Hb_001032_020 Hb_002485_010--Hb_009023_010 Hb_002485_010--Hb_000345_550 Hb_002485_010--Hb_000270_380 Hb_004375_120--Hb_000336_290 Hb_004375_120--Hb_000270_380 Hb_004375_120--Hb_001486_280 Hb_000622_050 Hb_000622_050 Hb_004375_120--Hb_000622_050 Hb_002182_010 Hb_002182_010 Hb_004375_120--Hb_002182_010 Hb_005784_010 Hb_005784_010 Hb_000345_550--Hb_005784_010 Hb_009785_030 Hb_009785_030 Hb_000345_550--Hb_009785_030 Hb_000345_550--Hb_001951_080 Hb_009783_010 Hb_009783_010 Hb_000345_550--Hb_009783_010 Hb_000345_550--Hb_009023_010 Hb_007904_280 Hb_007904_280 Hb_000345_550--Hb_007904_280 Hb_001951_080--Hb_012484_050 Hb_001951_080--Hb_005784_010 Hb_001951_080--Hb_001486_280 Hb_003097_160 Hb_003097_160 Hb_001951_080--Hb_003097_160 Hb_003125_210 Hb_003125_210 Hb_001951_080--Hb_003125_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.172769 1.99431 4.43131 10.2912 0.798826 0.0456523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0574329 0.15815 0.127684 0.0991048 7.30024

CAGE analysis