Hb_002999_080

Information

Type transcription factor
Description TF Family: G2-like
Location Contig2999: 63740-65543
Sequence    

Annotation

kegg
ID rcu:RCOM_0836650
description transcription factor, putative
nr
ID XP_012067659.1
description PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
swissprot
ID Q9SAK5
description Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2
trembl
ID A0A067KYF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15618 PE=4 SV=1
Gene Ontology
ID GO:0005488
description myb family transcription factor apl

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31345: 64195-64444 , PASA_asmbl_31346: 64620-65382
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002999_080 0.0 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
2 Hb_000997_240 0.0915254538 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA4, putative [Ricinus communis]
3 Hb_003411_020 0.1176020946 - - alpha-glucosidase, putative [Ricinus communis]
4 Hb_000866_320 0.1268844465 - - receptor protein kinase, putative [Ricinus communis]
5 Hb_155444_010 0.1282758482 - - -
6 Hb_000645_160 0.1313253123 - - protein translocase, putative [Ricinus communis]
7 Hb_000563_630 0.1315687406 - - PREDICTED: uncharacterized protein LOC105643442 [Jatropha curcas]
8 Hb_029142_040 0.1316893257 - - replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis]
9 Hb_001493_140 0.1320119529 - - hypothetical protein PHAVU_010G123100g [Phaseolus vulgaris]
10 Hb_000002_360 0.1363350315 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
11 Hb_034507_090 0.1388933757 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic [Jatropha curcas]
12 Hb_001178_090 0.1416384204 - - Monodehydroascorbate reductase family protein [Populus trichocarpa]
13 Hb_003529_240 0.1419351653 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2 [Gossypium raimondii]
14 Hb_001597_030 0.1425872048 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]
15 Hb_005357_120 0.1448003415 transcription factor TF Family: MYB-related -
16 Hb_007625_030 0.1449292322 - - unknown [Medicago truncatula]
17 Hb_008021_040 0.1458513603 - - PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
18 Hb_005333_080 0.1460352074 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012395_050 0.1505700372 - - PREDICTED: uncharacterized protein LOC105632180 [Jatropha curcas]
20 Hb_002641_140 0.1508151935 - - protein phosphatase 2c, putative [Ricinus communis]

Gene co-expression network

sample Hb_002999_080 Hb_002999_080 Hb_000997_240 Hb_000997_240 Hb_002999_080--Hb_000997_240 Hb_003411_020 Hb_003411_020 Hb_002999_080--Hb_003411_020 Hb_000866_320 Hb_000866_320 Hb_002999_080--Hb_000866_320 Hb_155444_010 Hb_155444_010 Hb_002999_080--Hb_155444_010 Hb_000645_160 Hb_000645_160 Hb_002999_080--Hb_000645_160 Hb_000563_630 Hb_000563_630 Hb_002999_080--Hb_000563_630 Hb_001348_010 Hb_001348_010 Hb_000997_240--Hb_001348_010 Hb_005000_280 Hb_005000_280 Hb_000997_240--Hb_005000_280 Hb_029142_040 Hb_029142_040 Hb_000997_240--Hb_029142_040 Hb_000997_240--Hb_155444_010 Hb_012395_050 Hb_012395_050 Hb_000997_240--Hb_012395_050 Hb_004079_100 Hb_004079_100 Hb_003411_020--Hb_004079_100 Hb_007479_080 Hb_007479_080 Hb_003411_020--Hb_007479_080 Hb_008566_080 Hb_008566_080 Hb_003411_020--Hb_008566_080 Hb_001677_090 Hb_001677_090 Hb_003411_020--Hb_001677_090 Hb_000398_140 Hb_000398_140 Hb_003411_020--Hb_000398_140 Hb_009627_020 Hb_009627_020 Hb_000866_320--Hb_009627_020 Hb_007625_030 Hb_007625_030 Hb_000866_320--Hb_007625_030 Hb_009838_120 Hb_009838_120 Hb_000866_320--Hb_009838_120 Hb_000002_360 Hb_000002_360 Hb_000866_320--Hb_000002_360 Hb_004659_100 Hb_004659_100 Hb_000866_320--Hb_004659_100 Hb_155444_010--Hb_012395_050 Hb_155444_010--Hb_029142_040 Hb_002518_020 Hb_002518_020 Hb_155444_010--Hb_002518_020 Hb_155444_010--Hb_000645_160 Hb_002749_040 Hb_002749_040 Hb_155444_010--Hb_002749_040 Hb_000742_130 Hb_000742_130 Hb_000645_160--Hb_000742_130 Hb_032920_030 Hb_032920_030 Hb_000645_160--Hb_032920_030 Hb_001936_180 Hb_001936_180 Hb_000645_160--Hb_001936_180 Hb_000098_260 Hb_000098_260 Hb_000645_160--Hb_000098_260 Hb_001138_070 Hb_001138_070 Hb_000645_160--Hb_001138_070 Hb_149055_010 Hb_149055_010 Hb_000645_160--Hb_149055_010 Hb_034507_090 Hb_034507_090 Hb_000563_630--Hb_034507_090 Hb_000210_160 Hb_000210_160 Hb_000563_630--Hb_000210_160 Hb_000563_630--Hb_000742_130 Hb_006120_210 Hb_006120_210 Hb_000563_630--Hb_006120_210 Hb_002888_100 Hb_002888_100 Hb_000563_630--Hb_002888_100 Hb_003849_200 Hb_003849_200 Hb_000563_630--Hb_003849_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.238079 2.46547 3.32806 7.72128 0.0154093 0.0798818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.375387 0.265769 0.0551099 2.9539 1.71717

CAGE analysis