Hb_002999_090

Information

Type -
Description -
Location Contig2999: 79663-80303
Sequence    

Annotation

kegg
ID rcu:RCOM_0836660
description hypothetical protein
nr
ID XP_002522450.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8Y1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0836660 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002999_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003462_150 0.0499709932 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
3 Hb_002556_020 0.050441787 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
4 Hb_004544_080 0.0534587666 - - lectin protein kinase [Populus trichocarpa]
5 Hb_000141_230 0.0562826728 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
6 Hb_001901_010 0.0623825957 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
7 Hb_002475_020 0.0668639983 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
8 Hb_006153_200 0.0893102484 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
9 Hb_000608_080 0.0909613978 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
10 Hb_000302_060 0.0921922814 - - unnamed protein product [Vitis vinifera]
11 Hb_000951_030 0.0925750313 - - kinase, putative [Ricinus communis]
12 Hb_001971_070 0.1019246077 - - unnamed protein product [Coffea canephora]
13 Hb_045992_010 0.1032279664 - - -
14 Hb_031340_030 0.1099085717 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
15 Hb_000948_070 0.1132280903 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
16 Hb_001218_020 0.1150250024 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
17 Hb_002204_030 0.1191154336 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
18 Hb_164162_020 0.1201224714 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
19 Hb_122574_020 0.1234884278 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
20 Hb_166813_010 0.1252370888 - - hypothetical protein JCGZ_24970 [Jatropha curcas]

Gene co-expression network

sample Hb_002999_090 Hb_002999_090 Hb_003462_150 Hb_003462_150 Hb_002999_090--Hb_003462_150 Hb_002556_020 Hb_002556_020 Hb_002999_090--Hb_002556_020 Hb_004544_080 Hb_004544_080 Hb_002999_090--Hb_004544_080 Hb_000141_230 Hb_000141_230 Hb_002999_090--Hb_000141_230 Hb_001901_010 Hb_001901_010 Hb_002999_090--Hb_001901_010 Hb_002475_020 Hb_002475_020 Hb_002999_090--Hb_002475_020 Hb_003462_150--Hb_004544_080 Hb_003462_150--Hb_000141_230 Hb_000608_080 Hb_000608_080 Hb_003462_150--Hb_000608_080 Hb_003462_150--Hb_002556_020 Hb_003462_150--Hb_002475_020 Hb_000951_030 Hb_000951_030 Hb_002556_020--Hb_000951_030 Hb_002556_020--Hb_002475_020 Hb_000302_060 Hb_000302_060 Hb_002556_020--Hb_000302_060 Hb_002556_020--Hb_000141_230 Hb_004544_080--Hb_000141_230 Hb_004544_080--Hb_000608_080 Hb_004544_080--Hb_002556_020 Hb_004544_080--Hb_002475_020 Hb_000141_230--Hb_000608_080 Hb_000141_230--Hb_000302_060 Hb_164162_020 Hb_164162_020 Hb_001901_010--Hb_164162_020 Hb_001971_070 Hb_001971_070 Hb_001901_010--Hb_001971_070 Hb_006153_200 Hb_006153_200 Hb_001901_010--Hb_006153_200 Hb_001901_010--Hb_003462_150 Hb_001901_010--Hb_004544_080 Hb_002475_020--Hb_000141_230 Hb_002475_020--Hb_000302_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.456735 0 0.381817 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.39184 0

CAGE analysis