Hb_002999_140

Information

Type -
Description -
Location Contig2999: 117193-125338
Sequence    

Annotation

kegg
ID pop:POPTR_0011s01952g
description hypothetical protein
nr
ID XP_006377206.1
description hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31348: 117007-117737 , PASA_asmbl_31349: 117870-118424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002999_140 0.0 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
2 Hb_019837_010 0.137433213 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001771_060 0.1553578982 - - hypothetical protein B456_012G144100 [Gossypium raimondii]
4 Hb_000808_260 0.1621329058 - - hypothetical protein RCOM_1434920 [Ricinus communis]
5 Hb_004864_010 0.1643085833 - - hypothetical protein CICLE_v10003960mg, partial [Citrus clementina]
6 Hb_003126_010 0.1685889383 - - PREDICTED: oligopeptide transporter 7-like isoform X1 [Malus domestica]
7 Hb_000594_150 0.1700971628 - - PREDICTED: serine/threonine-protein kinase STN7, chloroplastic-like isoform X1 [Nelumbo nucifera]
8 Hb_000010_370 0.1701104962 - - PREDICTED: uncharacterized protein LOC105640263 [Jatropha curcas]
9 Hb_012132_020 0.1704766616 - - glutamine synthetase [Hevea brasiliensis]
10 Hb_004976_080 0.1714153145 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
11 Hb_000926_070 0.179951268 - - conserved hypothetical protein [Ricinus communis]
12 Hb_119327_010 0.1811897231 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
13 Hb_074109_010 0.1820468824 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
14 Hb_001722_060 0.183115777 - - -
15 Hb_005183_040 0.1845197113 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
16 Hb_001836_010 0.1846035385 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 [Jatropha curcas]
17 Hb_000025_590 0.1852306341 - - PREDICTED: cytochrome P450 94A1-like isoform X1 [Jatropha curcas]
18 Hb_000072_240 0.1853776562 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
19 Hb_004907_070 0.1877992838 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
20 Hb_064293_010 0.189562203 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002999_140 Hb_002999_140 Hb_019837_010 Hb_019837_010 Hb_002999_140--Hb_019837_010 Hb_001771_060 Hb_001771_060 Hb_002999_140--Hb_001771_060 Hb_000808_260 Hb_000808_260 Hb_002999_140--Hb_000808_260 Hb_004864_010 Hb_004864_010 Hb_002999_140--Hb_004864_010 Hb_003126_010 Hb_003126_010 Hb_002999_140--Hb_003126_010 Hb_000594_150 Hb_000594_150 Hb_002999_140--Hb_000594_150 Hb_004976_080 Hb_004976_080 Hb_019837_010--Hb_004976_080 Hb_019837_010--Hb_000594_150 Hb_004907_070 Hb_004907_070 Hb_019837_010--Hb_004907_070 Hb_019837_010--Hb_000808_260 Hb_000072_240 Hb_000072_240 Hb_019837_010--Hb_000072_240 Hb_002999_130 Hb_002999_130 Hb_019837_010--Hb_002999_130 Hb_004108_120 Hb_004108_120 Hb_001771_060--Hb_004108_120 Hb_001771_060--Hb_002999_130 Hb_028285_020 Hb_028285_020 Hb_001771_060--Hb_028285_020 Hb_009557_080 Hb_009557_080 Hb_001771_060--Hb_009557_080 Hb_000656_260 Hb_000656_260 Hb_001771_060--Hb_000656_260 Hb_000808_260--Hb_004976_080 Hb_000808_260--Hb_000594_150 Hb_000808_260--Hb_004907_070 Hb_000808_260--Hb_000072_240 Hb_000808_260--Hb_003126_010 Hb_021443_050 Hb_021443_050 Hb_004864_010--Hb_021443_050 Hb_007035_010 Hb_007035_010 Hb_004864_010--Hb_007035_010 Hb_031201_010 Hb_031201_010 Hb_004864_010--Hb_031201_010 Hb_001866_100 Hb_001866_100 Hb_004864_010--Hb_001866_100 Hb_000856_130 Hb_000856_130 Hb_004864_010--Hb_000856_130 Hb_007205_020 Hb_007205_020 Hb_004864_010--Hb_007205_020 Hb_003126_010--Hb_000072_240 Hb_000049_290 Hb_000049_290 Hb_003126_010--Hb_000049_290 Hb_022487_010 Hb_022487_010 Hb_003126_010--Hb_022487_010 Hb_000331_220 Hb_000331_220 Hb_003126_010--Hb_000331_220 Hb_000363_050 Hb_000363_050 Hb_003126_010--Hb_000363_050 Hb_003126_010--Hb_000594_150 Hb_000594_150--Hb_000072_240 Hb_000594_150--Hb_004976_080 Hb_000594_150--Hb_002999_130 Hb_000594_150--Hb_004907_070 Hb_010180_050 Hb_010180_050 Hb_000594_150--Hb_010180_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.717815 0.625518 0.402991 0 0.0198864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.168464 0 0.243156 1.04322

CAGE analysis