Hb_003001_030

Information

Type -
Description -
Location Contig3001: 37488-44778
Sequence    

Annotation

kegg
ID rcu:RCOM_1749860
description RNA binding protein, putative
nr
ID XP_012085050.1
description PREDICTED: putative G3BP-like protein [Jatropha curcas]
swissprot
ID O94260
description Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1
trembl
ID A0A067JQW7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17509 PE=4 SV=1
Gene Ontology
ID GO:0097159
description g3bp-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31649: 37370-44684 , PASA_asmbl_31650: 37370-44684 , PASA_asmbl_31651: 37370-44702 , PASA_asmbl_31652: 37378-44660
cDNA
(Sanger)
(ID:Location)		 005_H08.ab1: 37374-39518 , 005_P07.ab1: 37370-39554 , 006_M13.ab1: 37370-39510 , 008_K15.ab1: 37375-39209 , 009_G23.ab1: 37370-39544 , 010_A03.ab1: 37375-39328 , 011_F24.ab1: 37370-39545 , 015_O06.ab1: 37374-39344 , 017_F13.ab1: 37370-39493 , 018_H05.ab1: 37370-39469 , 019_J20.ab1: 37370-39509 , 023_N11.ab1: 44025-44619 , 024_C07.ab1: 37368-39308 , 024_K17.ab1: 44026-44660 , 028_E13.ab1: 37370-39491 , 028_I09.ab1: 37370-39337 , 034_E22.ab1: 37378-39500 , 036_I05.ab1: 37374-39435 , 036_J24.ab1: 37370-39473 , 037_L02.ab1: 44011-44618 , 037_M06.ab1: 37370-39525 , 043_L03.ab1: 44011-44660 , 047_G12.ab1: 37370-39522 , 050_E03.ab1: 37370-39310

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_030 0.0 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
2 Hb_009510_030 0.068574838 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]
3 Hb_114684_020 0.0753088684 - - beta-1,3-glucanase [Hevea brasiliensis]
4 Hb_005730_020 0.0806332963 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
5 Hb_002609_260 0.0832808668 - - CCCH-type zinc finger protein [Hevea brasiliensis]
6 Hb_004126_010 0.083791642 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
7 Hb_000249_110 0.0906387647 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
8 Hb_000771_140 0.093567154 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
9 Hb_000387_080 0.0950942468 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
10 Hb_000057_060 0.0960413386 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
11 Hb_000264_190 0.0979806654 - - sphingolipid delta 4 desaturase/C-4 hydroxylase protein des2, putative [Ricinus communis]
12 Hb_002038_060 0.100161391 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
13 Hb_027751_020 0.1008908027 - - PREDICTED: uncharacterized protein LOC104886652 [Beta vulgaris subsp. vulgaris]
14 Hb_011174_070 0.1031783685 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
15 Hb_001767_010 0.1051212131 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
16 Hb_002506_010 0.1079298071 - - choline transporter-related family protein [Populus trichocarpa]
17 Hb_010931_100 0.1090834174 - - PREDICTED: uncharacterized protein LOC105638669 [Jatropha curcas]
18 Hb_026048_090 0.1102623733 - - conserved hypothetical protein [Ricinus communis]
19 Hb_014067_010 0.1118008547 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
20 Hb_002301_320 0.1119112426 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]

Gene co-expression network

sample Hb_003001_030 Hb_003001_030 Hb_009510_030 Hb_009510_030 Hb_003001_030--Hb_009510_030 Hb_114684_020 Hb_114684_020 Hb_003001_030--Hb_114684_020 Hb_005730_020 Hb_005730_020 Hb_003001_030--Hb_005730_020 Hb_002609_260 Hb_002609_260 Hb_003001_030--Hb_002609_260 Hb_004126_010 Hb_004126_010 Hb_003001_030--Hb_004126_010 Hb_000249_110 Hb_000249_110 Hb_003001_030--Hb_000249_110 Hb_009510_030--Hb_004126_010 Hb_002506_010 Hb_002506_010 Hb_009510_030--Hb_002506_010 Hb_026048_090 Hb_026048_090 Hb_009510_030--Hb_026048_090 Hb_000771_140 Hb_000771_140 Hb_009510_030--Hb_000771_140 Hb_000057_060 Hb_000057_060 Hb_009510_030--Hb_000057_060 Hb_000304_020 Hb_000304_020 Hb_114684_020--Hb_000304_020 Hb_114684_020--Hb_000771_140 Hb_001767_010 Hb_001767_010 Hb_114684_020--Hb_001767_010 Hb_000387_080 Hb_000387_080 Hb_114684_020--Hb_000387_080 Hb_114684_020--Hb_002609_260 Hb_005730_020--Hb_002609_260 Hb_000264_190 Hb_000264_190 Hb_005730_020--Hb_000264_190 Hb_005730_020--Hb_009510_030 Hb_010931_100 Hb_010931_100 Hb_005730_020--Hb_010931_100 Hb_000563_540 Hb_000563_540 Hb_005730_020--Hb_000563_540 Hb_002609_260--Hb_000264_190 Hb_002609_260--Hb_010931_100 Hb_005488_100 Hb_005488_100 Hb_002609_260--Hb_005488_100 Hb_027751_020 Hb_027751_020 Hb_002609_260--Hb_027751_020 Hb_002609_260--Hb_000563_540 Hb_014067_010 Hb_014067_010 Hb_004126_010--Hb_014067_010 Hb_004126_010--Hb_026048_090 Hb_004126_010--Hb_000057_060 Hb_004126_010--Hb_002506_010 Hb_000249_110--Hb_027751_020 Hb_002843_160 Hb_002843_160 Hb_000249_110--Hb_002843_160 Hb_000249_110--Hb_002609_260 Hb_004884_060 Hb_004884_060 Hb_000249_110--Hb_004884_060 Hb_003906_110 Hb_003906_110 Hb_000249_110--Hb_003906_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2182.99 279.999 39.6124 74.128 2545.74 2606.68
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1926.72 1426.9 2690.66 264.44 39.3741

CAGE analysis