Hb_003001_050

Information

Type -
Description -
Location Contig3001: 53938-55227
Sequence    

Annotation

kegg
ID rcu:RCOM_1749890
description hypothetical protein
nr
ID XP_002532735.1
description hypothetical protein RCOM_1749890 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T3B6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1749890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31656: 53929-54322
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_050 0.0 - - hypothetical protein RCOM_1749890 [Ricinus communis]
2 Hb_000015_190 0.1197006547 - - PREDICTED: uncharacterized protein LOC105647810 [Jatropha curcas]
3 Hb_001616_010 0.1376028444 - - hypothetical protein RCOM_1749890 [Ricinus communis]
4 Hb_000561_040 0.1453504386 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
5 Hb_001186_110 0.1466744993 - - hypothetical protein JCGZ_18389 [Jatropha curcas]
6 Hb_002616_020 0.1468850383 - - PREDICTED: peroxidase 3 [Jatropha curcas]
7 Hb_001616_100 0.1545473036 - - PREDICTED: cell division control protein 45 homolog [Jatropha curcas]
8 Hb_000015_140 0.1556831975 - - PREDICTED: CASP-like protein 4C1 [Vitis vinifera]
9 Hb_002869_090 0.1571627805 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
10 Hb_002701_030 0.1573919214 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
11 Hb_000352_360 0.1580483105 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
12 Hb_027400_020 0.1586254055 - - PREDICTED: uncharacterized protein At5g22580 isoform X2 [Jatropha curcas]
13 Hb_000463_120 0.1593741949 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
14 Hb_001922_030 0.1619687081 - - PREDICTED: probable membrane-associated kinase regulator 5 [Jatropha curcas]
15 Hb_000071_040 0.1644216926 - - hypothetical protein POPTR_0001s24580g [Populus trichocarpa]
16 Hb_002203_020 0.1659505155 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003607_090 0.1666537657 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
18 Hb_000419_140 0.1686823729 - - Aquaporin PIP2.1, putative [Ricinus communis]
19 Hb_000659_050 0.1705947921 - - PREDICTED: basic blue protein-like [Jatropha curcas]
20 Hb_003849_170 0.1720441221 - - hypothetical protein JCGZ_17850 [Jatropha curcas]

Gene co-expression network

sample Hb_003001_050 Hb_003001_050 Hb_000015_190 Hb_000015_190 Hb_003001_050--Hb_000015_190 Hb_001616_010 Hb_001616_010 Hb_003001_050--Hb_001616_010 Hb_000561_040 Hb_000561_040 Hb_003001_050--Hb_000561_040 Hb_001186_110 Hb_001186_110 Hb_003001_050--Hb_001186_110 Hb_002616_020 Hb_002616_020 Hb_003001_050--Hb_002616_020 Hb_001616_100 Hb_001616_100 Hb_003001_050--Hb_001616_100 Hb_000015_190--Hb_001616_100 Hb_000015_190--Hb_000561_040 Hb_027400_020 Hb_027400_020 Hb_000015_190--Hb_027400_020 Hb_001777_010 Hb_001777_010 Hb_000015_190--Hb_001777_010 Hb_000419_140 Hb_000419_140 Hb_000015_190--Hb_000419_140 Hb_000086_530 Hb_000086_530 Hb_001616_010--Hb_000086_530 Hb_000071_040 Hb_000071_040 Hb_001616_010--Hb_000071_040 Hb_002020_010 Hb_002020_010 Hb_001616_010--Hb_002020_010 Hb_000220_020 Hb_000220_020 Hb_001616_010--Hb_000220_020 Hb_005144_150 Hb_005144_150 Hb_001616_010--Hb_005144_150 Hb_000139_460 Hb_000139_460 Hb_001616_010--Hb_000139_460 Hb_000389_100 Hb_000389_100 Hb_000561_040--Hb_000389_100 Hb_002869_090 Hb_002869_090 Hb_000561_040--Hb_002869_090 Hb_000659_050 Hb_000659_050 Hb_000561_040--Hb_000659_050 Hb_120357_010 Hb_120357_010 Hb_000561_040--Hb_120357_010 Hb_000561_040--Hb_027400_020 Hb_049438_020 Hb_049438_020 Hb_000561_040--Hb_049438_020 Hb_000054_010 Hb_000054_010 Hb_001186_110--Hb_000054_010 Hb_000455_070 Hb_000455_070 Hb_001186_110--Hb_000455_070 Hb_002203_020 Hb_002203_020 Hb_001186_110--Hb_002203_020 Hb_000300_420 Hb_000300_420 Hb_001186_110--Hb_000300_420 Hb_174541_030 Hb_174541_030 Hb_001186_110--Hb_174541_030 Hb_000352_360 Hb_000352_360 Hb_002616_020--Hb_000352_360 Hb_002616_020--Hb_002869_090 Hb_002616_020--Hb_027400_020 Hb_000076_280 Hb_000076_280 Hb_002616_020--Hb_000076_280 Hb_002616_020--Hb_000419_140 Hb_003849_170 Hb_003849_170 Hb_002616_020--Hb_003849_170 Hb_002304_100 Hb_002304_100 Hb_001616_100--Hb_002304_100 Hb_000157_020 Hb_000157_020 Hb_001616_100--Hb_000157_020 Hb_000243_340 Hb_000243_340 Hb_001616_100--Hb_000243_340 Hb_000003_110 Hb_000003_110 Hb_001616_100--Hb_000003_110 Hb_000805_270 Hb_000805_270 Hb_001616_100--Hb_000805_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105901 0.390321 1.78237 11.4481 0.031637 0.0598131
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.521213 0.0585737 0 2.37855 1.52112

CAGE analysis