Hb_003001_060

Information

Type -
Description -
Location Contig3001: 57784-61099
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24770g
description POPTRDRAFT_645456; wound-responsive family protein
nr
ID XP_002301801.1
description wound-responsive family protein [Populus trichocarpa]
swissprot
ID Q09020
description Wound-induced basic protein OS=Phaseolus vulgaris GN=PR4 PE=2 SV=1
trembl
ID B9GQL8
description Wound-responsive family protein OS=Populus trichocarpa GN=POPTR_0002s24770g PE=4 SV=1
Gene Ontology
ID GO:0005829
description wound-induced basic protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31657: 57698-59360
cDNA
(Sanger)
(ID:Location)		 005_L11.ab1: 57898-59374 , 037_B15.ab1: 57807-59374 , 038_L04.ab1: 57807-59374 , 047_N11.ab1: 57781-59333

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_060 0.0 - - wound-responsive family protein [Populus trichocarpa]
2 Hb_003878_190 0.0552770576 - - hypothetical protein POPTR_0011s11040g [Populus trichocarpa]
3 Hb_011805_080 0.061092694 - - PREDICTED: uncharacterized protein LOC100242357 [Vitis vinifera]
4 Hb_002893_060 0.064515832 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
5 Hb_001369_650 0.0671089948 - - PREDICTED: chloride conductance regulatory protein ICln [Jatropha curcas]
6 Hb_003058_070 0.0743671474 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
7 Hb_000417_110 0.0749494022 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
8 Hb_002477_240 0.0782642393 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
9 Hb_000483_160 0.0790336973 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
10 Hb_000392_270 0.0800529431 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
11 Hb_003640_060 0.0803840479 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
12 Hb_001824_070 0.0823629294 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
13 Hb_001951_110 0.0831880284 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
14 Hb_009767_120 0.0856555548 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
15 Hb_003551_020 0.0879184683 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
16 Hb_000260_050 0.0886348668 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
17 Hb_001818_020 0.0887131832 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
18 Hb_001623_330 0.0888458771 - - PREDICTED: uncharacterized protein LOC105638463 [Jatropha curcas]
19 Hb_001584_070 0.0890862973 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000977_080 0.0893941768 - - type II inositol 5-phosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003001_060 Hb_003001_060 Hb_003878_190 Hb_003878_190 Hb_003001_060--Hb_003878_190 Hb_011805_080 Hb_011805_080 Hb_003001_060--Hb_011805_080 Hb_002893_060 Hb_002893_060 Hb_003001_060--Hb_002893_060 Hb_001369_650 Hb_001369_650 Hb_003001_060--Hb_001369_650 Hb_003058_070 Hb_003058_070 Hb_003001_060--Hb_003058_070 Hb_000417_110 Hb_000417_110 Hb_003001_060--Hb_000417_110 Hb_001824_070 Hb_001824_070 Hb_003878_190--Hb_001824_070 Hb_000392_270 Hb_000392_270 Hb_003878_190--Hb_000392_270 Hb_000928_240 Hb_000928_240 Hb_003878_190--Hb_000928_240 Hb_009711_030 Hb_009711_030 Hb_003878_190--Hb_009711_030 Hb_000977_080 Hb_000977_080 Hb_003878_190--Hb_000977_080 Hb_007617_020 Hb_007617_020 Hb_011805_080--Hb_007617_020 Hb_011805_080--Hb_001369_650 Hb_011805_080--Hb_002893_060 Hb_007747_090 Hb_007747_090 Hb_011805_080--Hb_007747_090 Hb_011805_080--Hb_003878_190 Hb_000465_060 Hb_000465_060 Hb_002893_060--Hb_000465_060 Hb_000025_530 Hb_000025_530 Hb_002893_060--Hb_000025_530 Hb_023732_070 Hb_023732_070 Hb_002893_060--Hb_023732_070 Hb_002893_060--Hb_003878_190 Hb_002893_060--Hb_001824_070 Hb_001369_650--Hb_000392_270 Hb_000045_130 Hb_000045_130 Hb_001369_650--Hb_000045_130 Hb_011360_140 Hb_011360_140 Hb_001369_650--Hb_011360_140 Hb_001369_650--Hb_000977_080 Hb_009767_120 Hb_009767_120 Hb_001369_650--Hb_009767_120 Hb_003058_070--Hb_000417_110 Hb_002234_210 Hb_002234_210 Hb_003058_070--Hb_002234_210 Hb_000190_060 Hb_000190_060 Hb_003058_070--Hb_000190_060 Hb_000365_380 Hb_000365_380 Hb_003058_070--Hb_000365_380 Hb_000798_030 Hb_000798_030 Hb_003058_070--Hb_000798_030 Hb_000634_050 Hb_000634_050 Hb_000417_110--Hb_000634_050 Hb_001584_070 Hb_001584_070 Hb_000417_110--Hb_001584_070 Hb_001951_110 Hb_001951_110 Hb_000417_110--Hb_001951_110 Hb_000417_110--Hb_000798_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
427.397 119.183 113.44 96.2468 427.256 421.544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
496.571 756.139 197.398 161.683 57.6749

CAGE analysis