Hb_003001_110

Information

Type -
Description -
Location Contig3001: 118503-122674
Sequence    

Annotation

kegg
ID rcu:RCOM_1750180
description Oleoyl-acyl carrier protein thioesterase, putative (EC:3.1.2.14)
nr
ID NP_001292940.1
description oleoyl-acyl carrier protein thioesterase 1, chloroplastic [Jatropha curcas]
swissprot
ID Q42561
description Oleoyl-acyl carrier protein thioesterase 1, chloroplastic OS=Arabidopsis thaliana GN=FATA PE=1 SV=1
trembl
ID A9UFC5
description Acyl-ACP thioesterase OS=Jatropha curcas GN=FATA PE=2 SV=2
Gene Ontology
ID GO:0004320
description acyl-acp thioesterase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31672: 118654-122678 , PASA_asmbl_31673: 121382-121870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_110 0.0 - - oleoyl-acyl carrier protein thioesterase 1, chloroplastic [Jatropha curcas]
2 Hb_000789_070 0.1203518557 - - conserved hypothetical protein [Ricinus communis]
3 Hb_017002_020 0.1343480661 - - PREDICTED: uncharacterized protein LOC105650411 [Jatropha curcas]
4 Hb_002028_140 0.1363128989 transcription factor TF Family: Tify JAZ11 [Hevea brasiliensis]
5 Hb_007885_060 0.1429480529 - - replication factor C 40 kDa family protein [Populus trichocarpa]
6 Hb_001998_120 0.1449481333 - - PREDICTED: uncharacterized oxidoreductase C663.09c isoform X1 [Jatropha curcas]
7 Hb_004785_190 0.1461929202 - - PHD finger family protein [Populus trichocarpa]
8 Hb_002820_110 0.1479503324 - - PREDICTED: uncharacterized protein LOC105638918 [Jatropha curcas]
9 Hb_002284_150 0.1490639137 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
10 Hb_000367_160 0.1500149709 - - PREDICTED: SNAP25 homologous protein SNAP33 [Populus euphratica]
11 Hb_000926_180 0.1503916126 - - proline synthetase associated protein, putative [Ricinus communis]
12 Hb_002311_180 0.1522216496 - - drought-responsive family protein [Populus trichocarpa]
13 Hb_001956_040 0.1527885975 - - PREDICTED: PGR5-like protein 1B, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_000462_130 0.1529858897 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
15 Hb_001534_050 0.153906597 - - PREDICTED: uncharacterized protein LOC105642299 [Jatropha curcas]
16 Hb_003749_010 0.1541644864 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000422_030 0.1553066574 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
18 Hb_007533_010 0.1569933157 transcription factor TF Family: bZIP G-box-binding factor, putative [Ricinus communis]
19 Hb_008686_080 0.1571157539 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
20 Hb_001898_240 0.1588600189 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]

Gene co-expression network

sample Hb_003001_110 Hb_003001_110 Hb_000789_070 Hb_000789_070 Hb_003001_110--Hb_000789_070 Hb_017002_020 Hb_017002_020 Hb_003001_110--Hb_017002_020 Hb_002028_140 Hb_002028_140 Hb_003001_110--Hb_002028_140 Hb_007885_060 Hb_007885_060 Hb_003001_110--Hb_007885_060 Hb_001998_120 Hb_001998_120 Hb_003001_110--Hb_001998_120 Hb_004785_190 Hb_004785_190 Hb_003001_110--Hb_004785_190 Hb_000789_070--Hb_004785_190 Hb_003747_220 Hb_003747_220 Hb_000789_070--Hb_003747_220 Hb_002296_050 Hb_002296_050 Hb_000789_070--Hb_002296_050 Hb_000422_030 Hb_000422_030 Hb_000789_070--Hb_000422_030 Hb_001534_050 Hb_001534_050 Hb_000789_070--Hb_001534_050 Hb_002820_110 Hb_002820_110 Hb_017002_020--Hb_002820_110 Hb_000510_330 Hb_000510_330 Hb_017002_020--Hb_000510_330 Hb_000444_080 Hb_000444_080 Hb_017002_020--Hb_000444_080 Hb_002045_040 Hb_002045_040 Hb_017002_020--Hb_002045_040 Hb_017002_020--Hb_001534_050 Hb_002876_240 Hb_002876_240 Hb_017002_020--Hb_002876_240 Hb_002542_040 Hb_002542_040 Hb_002028_140--Hb_002542_040 Hb_001953_070 Hb_001953_070 Hb_002028_140--Hb_001953_070 Hb_002016_150 Hb_002016_150 Hb_002028_140--Hb_002016_150 Hb_002028_140--Hb_001998_120 Hb_000010_110 Hb_000010_110 Hb_002028_140--Hb_000010_110 Hb_000367_160 Hb_000367_160 Hb_002028_140--Hb_000367_160 Hb_002820_050 Hb_002820_050 Hb_007885_060--Hb_002820_050 Hb_000181_090 Hb_000181_090 Hb_007885_060--Hb_000181_090 Hb_002311_180 Hb_002311_180 Hb_007885_060--Hb_002311_180 Hb_004453_130 Hb_004453_130 Hb_007885_060--Hb_004453_130 Hb_002299_030 Hb_002299_030 Hb_007885_060--Hb_002299_030 Hb_007533_010 Hb_007533_010 Hb_007885_060--Hb_007533_010 Hb_012016_010 Hb_012016_010 Hb_001998_120--Hb_012016_010 Hb_004934_030 Hb_004934_030 Hb_001998_120--Hb_004934_030 Hb_000633_020 Hb_000633_020 Hb_001998_120--Hb_000633_020 Hb_001998_120--Hb_000444_080 Hb_000260_800 Hb_000260_800 Hb_001998_120--Hb_000260_800 Hb_001476_070 Hb_001476_070 Hb_001998_120--Hb_001476_070 Hb_000926_310 Hb_000926_310 Hb_004785_190--Hb_000926_310 Hb_000610_010 Hb_000610_010 Hb_004785_190--Hb_000610_010 Hb_000661_140 Hb_000661_140 Hb_004785_190--Hb_000661_140 Hb_003687_230 Hb_003687_230 Hb_004785_190--Hb_003687_230 Hb_000009_530 Hb_000009_530 Hb_004785_190--Hb_000009_530 Hb_004785_190--Hb_002296_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.1663 60.3392 122.878 39.1682 69.4789 48.9622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
136.269 79.8337 51.2233 13.612 26.7793

CAGE analysis