Hb_003001_120

Information

Type -
Description -
Location Contig3001: 129034-131166
Sequence    

Annotation

kegg
ID rcu:RCOM_1750200
description RING finger protein, putative
nr
ID XP_012085071.1
description PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
swissprot
ID Q9QZS2
description E3 ubiquitin-protein ligase RNF4 OS=Mus musculus GN=Rnf4 PE=1 SV=1
trembl
ID A0A067K272
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17518 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rnf4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31676: 129222-131864 , PASA_asmbl_31678: 131332-131739
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_120 0.0 - - PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X2 [Jatropha curcas]
2 Hb_003929_160 0.0518885813 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
3 Hb_011689_080 0.059300311 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
4 Hb_001936_080 0.0595144759 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
5 Hb_001269_680 0.0664702816 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
6 Hb_118707_030 0.0676026524 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
7 Hb_000230_200 0.0685502415 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
8 Hb_009557_070 0.0703039859 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002968_060 0.0719743763 - - PREDICTED: uncharacterized protein LOC105638042 [Jatropha curcas]
10 Hb_000926_280 0.0721745251 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
11 Hb_002616_050 0.0736102488 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
12 Hb_005539_350 0.0741517777 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007218_080 0.0744706222 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
14 Hb_000089_220 0.0746396219 - - PREDICTED: protein FAM133-like [Populus euphratica]
15 Hb_148912_010 0.0748108773 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004310_130 0.0748213499 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
17 Hb_000529_190 0.0770661981 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
18 Hb_000103_560 0.0773708617 - - ADP-ribosylation factor, putative [Ricinus communis]
19 Hb_001604_080 0.0780303797 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
20 Hb_003058_130 0.0781485441 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003001_120 Hb_003001_120 Hb_003929_160 Hb_003929_160 Hb_003001_120--Hb_003929_160 Hb_011689_080 Hb_011689_080 Hb_003001_120--Hb_011689_080 Hb_001936_080 Hb_001936_080 Hb_003001_120--Hb_001936_080 Hb_001269_680 Hb_001269_680 Hb_003001_120--Hb_001269_680 Hb_118707_030 Hb_118707_030 Hb_003001_120--Hb_118707_030 Hb_000230_200 Hb_000230_200 Hb_003001_120--Hb_000230_200 Hb_007380_070 Hb_007380_070 Hb_003929_160--Hb_007380_070 Hb_004109_090 Hb_004109_090 Hb_003929_160--Hb_004109_090 Hb_005539_350 Hb_005539_350 Hb_003929_160--Hb_005539_350 Hb_005663_060 Hb_005663_060 Hb_003929_160--Hb_005663_060 Hb_000926_280 Hb_000926_280 Hb_003929_160--Hb_000926_280 Hb_000398_180 Hb_000398_180 Hb_011689_080--Hb_000398_180 Hb_003058_130 Hb_003058_130 Hb_011689_080--Hb_003058_130 Hb_003392_040 Hb_003392_040 Hb_011689_080--Hb_003392_040 Hb_004324_310 Hb_004324_310 Hb_011689_080--Hb_004324_310 Hb_001377_290 Hb_001377_290 Hb_011689_080--Hb_001377_290 Hb_028227_020 Hb_028227_020 Hb_001936_080--Hb_028227_020 Hb_002495_040 Hb_002495_040 Hb_001936_080--Hb_002495_040 Hb_009557_070 Hb_009557_070 Hb_001936_080--Hb_009557_070 Hb_000465_430 Hb_000465_430 Hb_001936_080--Hb_000465_430 Hb_012092_010 Hb_012092_010 Hb_001936_080--Hb_012092_010 Hb_007778_030 Hb_007778_030 Hb_001269_680--Hb_007778_030 Hb_001269_680--Hb_005539_350 Hb_002007_060 Hb_002007_060 Hb_001269_680--Hb_002007_060 Hb_001662_070 Hb_001662_070 Hb_001269_680--Hb_001662_070 Hb_001269_680--Hb_000230_200 Hb_002214_040 Hb_002214_040 Hb_118707_030--Hb_002214_040 Hb_002205_070 Hb_002205_070 Hb_118707_030--Hb_002205_070 Hb_118707_030--Hb_011689_080 Hb_000815_040 Hb_000815_040 Hb_118707_030--Hb_000815_040 Hb_000656_400 Hb_000656_400 Hb_118707_030--Hb_000656_400 Hb_000107_620 Hb_000107_620 Hb_118707_030--Hb_000107_620 Hb_002968_060 Hb_002968_060 Hb_000230_200--Hb_002968_060 Hb_001301_160 Hb_001301_160 Hb_000230_200--Hb_001301_160 Hb_007951_060 Hb_007951_060 Hb_000230_200--Hb_007951_060 Hb_029920_050 Hb_029920_050 Hb_000230_200--Hb_029920_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
93.6385 31.0033 48.4208 44.6108 68.8276 110.15
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
95.024 88.3425 74.2865 31.2453 36.0481

CAGE analysis