Hb_003001_140

Information

Type -
Description -
Location Contig3001: 136927-143064
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24680g
description POPTRDRAFT_709976; RPM1-interacting protein 4
nr
ID XP_012085074.1
description PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
swissprot
ID Q8GYN5
description RPM1-interacting protein 4 OS=Arabidopsis thaliana GN=RIN4 PE=1 SV=1
trembl
ID A0A067JR54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17520 PE=4 SV=1
Gene Ontology
ID GO:0019897
description rpm1-interacting protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31681: 136971-143005 , PASA_asmbl_31683: 137219-142696
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003001_140 0.0 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
2 Hb_011571_020 0.0564558036 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
3 Hb_000089_220 0.065155268 - - PREDICTED: protein FAM133-like [Populus euphratica]
4 Hb_001301_160 0.0679946936 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
5 Hb_006185_050 0.0721406449 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
6 Hb_000056_200 0.0729695068 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
7 Hb_000398_180 0.0739272719 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
8 Hb_001226_160 0.0760120678 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
9 Hb_003175_010 0.0766059025 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
10 Hb_003929_160 0.0768564785 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
11 Hb_000926_280 0.0781751976 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
12 Hb_003642_060 0.0788351343 - - hypothetical protein RCOM_1189860 [Ricinus communis]
13 Hb_000395_170 0.0795754416 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
14 Hb_000030_300 0.0797799931 - - Thioredoxin, putative [Ricinus communis]
15 Hb_000243_030 0.0819932287 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
16 Hb_005332_070 0.0821637034 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
17 Hb_001511_020 0.082623409 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
18 Hb_007951_050 0.0827132188 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_005539_350 0.0831122966 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003766_040 0.0835451714 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003001_140 Hb_003001_140 Hb_011571_020 Hb_011571_020 Hb_003001_140--Hb_011571_020 Hb_000089_220 Hb_000089_220 Hb_003001_140--Hb_000089_220 Hb_001301_160 Hb_001301_160 Hb_003001_140--Hb_001301_160 Hb_006185_050 Hb_006185_050 Hb_003001_140--Hb_006185_050 Hb_000056_200 Hb_000056_200 Hb_003001_140--Hb_000056_200 Hb_000398_180 Hb_000398_180 Hb_003001_140--Hb_000398_180 Hb_011360_140 Hb_011360_140 Hb_011571_020--Hb_011360_140 Hb_005993_040 Hb_005993_040 Hb_011571_020--Hb_005993_040 Hb_011571_020--Hb_001301_160 Hb_005332_070 Hb_005332_070 Hb_011571_020--Hb_005332_070 Hb_000473_040 Hb_000473_040 Hb_011571_020--Hb_000473_040 Hb_003406_010 Hb_003406_010 Hb_000089_220--Hb_003406_010 Hb_000089_220--Hb_006185_050 Hb_003642_060 Hb_003642_060 Hb_000089_220--Hb_003642_060 Hb_003010_030 Hb_003010_030 Hb_000089_220--Hb_003010_030 Hb_000926_280 Hb_000926_280 Hb_000089_220--Hb_000926_280 Hb_096563_010 Hb_096563_010 Hb_001301_160--Hb_096563_010 Hb_002007_060 Hb_002007_060 Hb_001301_160--Hb_002007_060 Hb_001511_020 Hb_001511_020 Hb_001301_160--Hb_001511_020 Hb_000661_250 Hb_000661_250 Hb_001301_160--Hb_000661_250 Hb_000230_200 Hb_000230_200 Hb_001301_160--Hb_000230_200 Hb_001305_010 Hb_001305_010 Hb_006185_050--Hb_001305_010 Hb_000392_300 Hb_000392_300 Hb_006185_050--Hb_000392_300 Hb_000327_120 Hb_000327_120 Hb_006185_050--Hb_000327_120 Hb_001595_030 Hb_001595_030 Hb_006185_050--Hb_001595_030 Hb_003175_010 Hb_003175_010 Hb_006185_050--Hb_003175_010 Hb_001821_010 Hb_001821_010 Hb_000056_200--Hb_001821_010 Hb_000920_180 Hb_000920_180 Hb_000056_200--Hb_000920_180 Hb_003050_080 Hb_003050_080 Hb_000056_200--Hb_003050_080 Hb_000243_030 Hb_000243_030 Hb_000056_200--Hb_000243_030 Hb_063716_050 Hb_063716_050 Hb_000056_200--Hb_063716_050 Hb_002044_080 Hb_002044_080 Hb_000056_200--Hb_002044_080 Hb_028872_140 Hb_028872_140 Hb_000398_180--Hb_028872_140 Hb_001377_290 Hb_001377_290 Hb_000398_180--Hb_001377_290 Hb_004195_160 Hb_004195_160 Hb_000398_180--Hb_004195_160 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_006332_020 Hb_006332_020 Hb_000398_180--Hb_006332_020 Hb_007380_070 Hb_007380_070 Hb_000398_180--Hb_007380_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.8516 50.2778 49.8586 32.6902 88.5108 127.333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
77.4515 117.25 103.945 37.6464 29.7121

CAGE analysis