Hb_003005_020

Information

Type -
Description -
Location Contig3005: 52092-52997
Sequence    

Annotation

kegg
ID rcu:RCOM_0461750
description X-ray repair cross complementing protein 3, xrcc3, putative
nr
ID XP_012074059.1
description PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
swissprot
ID Q9FKM5
description DNA repair protein XRCC3 homolog OS=Arabidopsis thaliana GN=XRCC3 PE=1 SV=1
trembl
ID A0A067KJJ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08670 PE=4 SV=1
Gene Ontology
ID GO:0003697
description dna repair protein xrcc3 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31688: 52213-52699 , PASA_asmbl_31689: 52725-91245
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003005_020 0.0 - - PREDICTED: DNA repair protein XRCC3 homolog [Jatropha curcas]
2 Hb_004440_090 0.0585544946 - - PREDICTED: phosphopantetheine adenylyltransferase [Jatropha curcas]
3 Hb_000172_370 0.0586319692 - - -
4 Hb_000384_090 0.0605070821 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
5 Hb_000608_030 0.0632438708 - - hypothetical protein JCGZ_18019 [Jatropha curcas]
6 Hb_148912_010 0.0707136776 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000398_180 0.0728304209 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
8 Hb_003120_060 0.0729051023 - - PREDICTED: prostaglandin E synthase 2 [Jatropha curcas]
9 Hb_002149_020 0.0729409891 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
10 Hb_063134_010 0.0743678182 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
11 Hb_005063_040 0.075153387 - - PREDICTED: E3 ubiquitin protein ligase DRIP2-like isoform X1 [Jatropha curcas]
12 Hb_029510_140 0.0758741644 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
13 Hb_002616_050 0.0760717185 - - PREDICTED: traB domain-containing protein [Jatropha curcas]
14 Hb_002391_300 0.0762467515 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
15 Hb_000363_500 0.0766980568 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
16 Hb_002609_110 0.0779121705 - - hypothetical protein JCGZ_08497 [Jatropha curcas]
17 Hb_002411_170 0.0794025611 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
18 Hb_004195_160 0.0798297581 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
19 Hb_000943_070 0.0800584523 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
20 Hb_125000_010 0.080908546 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_003005_020 Hb_003005_020 Hb_004440_090 Hb_004440_090 Hb_003005_020--Hb_004440_090 Hb_000172_370 Hb_000172_370 Hb_003005_020--Hb_000172_370 Hb_000384_090 Hb_000384_090 Hb_003005_020--Hb_000384_090 Hb_000608_030 Hb_000608_030 Hb_003005_020--Hb_000608_030 Hb_148912_010 Hb_148912_010 Hb_003005_020--Hb_148912_010 Hb_000398_180 Hb_000398_180 Hb_003005_020--Hb_000398_180 Hb_002391_300 Hb_002391_300 Hb_004440_090--Hb_002391_300 Hb_063716_050 Hb_063716_050 Hb_004440_090--Hb_063716_050 Hb_000046_280 Hb_000046_280 Hb_004440_090--Hb_000046_280 Hb_004440_090--Hb_000398_180 Hb_007426_230 Hb_007426_230 Hb_004440_090--Hb_007426_230 Hb_000172_370--Hb_148912_010 Hb_010436_070 Hb_010436_070 Hb_000172_370--Hb_010436_070 Hb_003038_030 Hb_003038_030 Hb_000172_370--Hb_003038_030 Hb_118419_020 Hb_118419_020 Hb_000172_370--Hb_118419_020 Hb_004195_160 Hb_004195_160 Hb_000172_370--Hb_004195_160 Hb_000384_090--Hb_000608_030 Hb_003120_060 Hb_003120_060 Hb_000384_090--Hb_003120_060 Hb_063134_010 Hb_063134_010 Hb_000384_090--Hb_063134_010 Hb_002609_110 Hb_002609_110 Hb_000384_090--Hb_002609_110 Hb_003195_060 Hb_003195_060 Hb_000384_090--Hb_003195_060 Hb_000815_210 Hb_000815_210 Hb_000608_030--Hb_000815_210 Hb_003406_010 Hb_003406_010 Hb_000608_030--Hb_003406_010 Hb_000943_070 Hb_000943_070 Hb_000608_030--Hb_000943_070 Hb_000608_030--Hb_003120_060 Hb_148912_010--Hb_003038_030 Hb_002411_170 Hb_002411_170 Hb_148912_010--Hb_002411_170 Hb_148912_010--Hb_063716_050 Hb_000395_170 Hb_000395_170 Hb_148912_010--Hb_000395_170 Hb_125000_010 Hb_125000_010 Hb_148912_010--Hb_125000_010 Hb_028872_140 Hb_028872_140 Hb_000398_180--Hb_028872_140 Hb_001377_290 Hb_001377_290 Hb_000398_180--Hb_001377_290 Hb_000398_180--Hb_004195_160 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_006332_020 Hb_006332_020 Hb_000398_180--Hb_006332_020 Hb_007380_070 Hb_007380_070 Hb_000398_180--Hb_007380_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.029 4.0598 4.08634 5.56542 16.2696 20.1311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.0045 14.3535 12.1278 4.91363 5.13176

CAGE analysis