Hb_003005_040

Information

Type -
Description -
Location Contig3005: 54001-56763
Sequence    

Annotation

kegg
ID tcc:TCM_005025
description DNA/RNA polymerases superfamily protein
nr
ID XP_007051412.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061DRY4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_005025 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31690: 56045-56495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003005_040 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_181240_010 0.2293867416 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_004324_080 0.2329154513 - - -
4 Hb_006132_030 0.2381352001 - - hypothetical protein CARUB_v10012126mg, partial [Capsella rubella]
5 Hb_004734_050 0.2404672911 - - -
6 Hb_001229_020 0.2411243742 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
7 Hb_043708_010 0.2418047238 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
8 Hb_042202_050 0.2421221453 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
9 Hb_005344_030 0.2440630979 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
10 Hb_008698_010 0.2509767666 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
11 Hb_002243_070 0.2560047391 - - sodium-bile acid cotransporter, putative [Ricinus communis]
12 Hb_077935_010 0.2695857799 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_011484_010 0.2713842828 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_007054_050 0.272208039 - - -
15 Hb_000460_070 0.2779774321 - - luminal binding protein [Gossypium hirsutum]
16 Hb_008326_010 0.2814811729 - - putative polyprotein [Oryza sativa Japonica Group]
17 Hb_000156_210 0.2818438527 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
18 Hb_000608_460 0.2830889434 - - -
19 Hb_000837_010 0.2890525491 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
20 Hb_033152_040 0.2898025612 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003005_040 Hb_003005_040 Hb_181240_010 Hb_181240_010 Hb_003005_040--Hb_181240_010 Hb_004324_080 Hb_004324_080 Hb_003005_040--Hb_004324_080 Hb_006132_030 Hb_006132_030 Hb_003005_040--Hb_006132_030 Hb_004734_050 Hb_004734_050 Hb_003005_040--Hb_004734_050 Hb_001229_020 Hb_001229_020 Hb_003005_040--Hb_001229_020 Hb_043708_010 Hb_043708_010 Hb_003005_040--Hb_043708_010 Hb_181240_010--Hb_004734_050 Hb_000915_030 Hb_000915_030 Hb_181240_010--Hb_000915_030 Hb_181240_010--Hb_004324_080 Hb_014568_020 Hb_014568_020 Hb_181240_010--Hb_014568_020 Hb_000608_460 Hb_000608_460 Hb_181240_010--Hb_000608_460 Hb_000046_160 Hb_000046_160 Hb_004324_080--Hb_000046_160 Hb_004324_080--Hb_000608_460 Hb_004324_080--Hb_004734_050 Hb_004324_080--Hb_014568_020 Hb_005344_030 Hb_005344_030 Hb_006132_030--Hb_005344_030 Hb_011484_010 Hb_011484_010 Hb_006132_030--Hb_011484_010 Hb_000154_010 Hb_000154_010 Hb_006132_030--Hb_000154_010 Hb_133820_010 Hb_133820_010 Hb_006132_030--Hb_133820_010 Hb_000702_080 Hb_000702_080 Hb_006132_030--Hb_000702_080 Hb_000052_020 Hb_000052_020 Hb_006132_030--Hb_000052_020 Hb_003124_060 Hb_003124_060 Hb_004734_050--Hb_003124_060 Hb_004448_060 Hb_004448_060 Hb_004734_050--Hb_004448_060 Hb_004734_050--Hb_000915_030 Hb_042202_050 Hb_042202_050 Hb_004734_050--Hb_042202_050 Hb_004734_050--Hb_011484_010 Hb_000460_070 Hb_000460_070 Hb_001229_020--Hb_000460_070 Hb_008698_010 Hb_008698_010 Hb_001229_020--Hb_008698_010 Hb_003124_110 Hb_003124_110 Hb_001229_020--Hb_003124_110 Hb_001621_060 Hb_001621_060 Hb_001229_020--Hb_001621_060 Hb_002078_300 Hb_002078_300 Hb_001229_020--Hb_002078_300 Hb_002534_030 Hb_002534_030 Hb_001229_020--Hb_002534_030 Hb_004650_060 Hb_004650_060 Hb_043708_010--Hb_004650_060 Hb_019656_010 Hb_019656_010 Hb_043708_010--Hb_019656_010 Hb_131102_010 Hb_131102_010 Hb_043708_010--Hb_131102_010 Hb_002791_020 Hb_002791_020 Hb_043708_010--Hb_002791_020 Hb_043708_010--Hb_000154_010 Hb_008730_010 Hb_008730_010 Hb_043708_010--Hb_008730_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0274469 0.0292503 0.0164253 0.00858671 0.0221504 0.0107641
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.150893 0.395743 0.336768 0.0393997 0.792126

CAGE analysis