Hb_003006_060

Information

Type -
Description -
Location Contig3006: 92255-97308
Sequence    

Annotation

kegg
ID rcu:RCOM_0979410
description Pre-mRNA-splicing factor syf2, putative
nr
ID XP_012081803.1
description PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
swissprot
ID Q28G05
description Pre-mRNA-splicing factor syf2 OS=Xenopus tropicalis GN=syf2 PE=2 SV=1
trembl
ID A0A067KBP8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18837 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31692: 92340-97224
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003006_060 0.0 - - PREDICTED: pre-mRNA-splicing factor syf2 [Jatropha curcas]
2 Hb_002942_080 0.0647251987 - - PREDICTED: signal recognition particle subunit SRP68 [Jatropha curcas]
3 Hb_004678_060 0.06615964 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
4 Hb_000104_080 0.0693262832 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
5 Hb_010423_020 0.0708745788 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
6 Hb_008143_030 0.0714199377 - - PREDICTED: uncharacterized protein LOC105650295 isoform X2 [Jatropha curcas]
7 Hb_009265_080 0.0716542277 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
8 Hb_004195_280 0.072564608 - - PREDICTED: CDK5RAP1-like protein [Jatropha curcas]
9 Hb_000088_200 0.0773015833 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
10 Hb_000640_320 0.0776152988 - - PREDICTED: uncharacterized protein LOC105642644 isoform X2 [Jatropha curcas]
11 Hb_007668_040 0.0780900067 - - PREDICTED: uncharacterized protein LOC103409082 [Malus domestica]
12 Hb_000236_280 0.0789452709 - - PREDICTED: coiled-coil domain-containing protein 22 homolog isoform X1 [Jatropha curcas]
13 Hb_073171_080 0.079278517 - - PREDICTED: MMS19 nucleotide excision repair protein homolog isoform X1 [Jatropha curcas]
14 Hb_001584_290 0.0801245717 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
15 Hb_000923_040 0.080679311 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
16 Hb_001863_110 0.080892929 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
17 Hb_002400_180 0.0825465562 - - conserved hypothetical protein [Ricinus communis]
18 Hb_171900_100 0.0828434177 - - PREDICTED: putative uncharacterized protein DDB_G0270496 [Jatropha curcas]
19 Hb_005237_060 0.0839336435 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
20 Hb_024714_020 0.0840918404 - - WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003006_060 Hb_003006_060 Hb_002942_080 Hb_002942_080 Hb_003006_060--Hb_002942_080 Hb_004678_060 Hb_004678_060 Hb_003006_060--Hb_004678_060 Hb_000104_080 Hb_000104_080 Hb_003006_060--Hb_000104_080 Hb_010423_020 Hb_010423_020 Hb_003006_060--Hb_010423_020 Hb_008143_030 Hb_008143_030 Hb_003006_060--Hb_008143_030 Hb_009265_080 Hb_009265_080 Hb_003006_060--Hb_009265_080 Hb_007668_040 Hb_007668_040 Hb_002942_080--Hb_007668_040 Hb_009913_050 Hb_009913_050 Hb_002942_080--Hb_009913_050 Hb_002675_060 Hb_002675_060 Hb_002942_080--Hb_002675_060 Hb_005214_060 Hb_005214_060 Hb_002942_080--Hb_005214_060 Hb_024990_010 Hb_024990_010 Hb_002942_080--Hb_024990_010 Hb_002400_180 Hb_002400_180 Hb_004678_060--Hb_002400_180 Hb_003656_160 Hb_003656_160 Hb_004678_060--Hb_003656_160 Hb_004678_060--Hb_009265_080 Hb_008253_010 Hb_008253_010 Hb_004678_060--Hb_008253_010 Hb_002007_350 Hb_002007_350 Hb_004678_060--Hb_002007_350 Hb_000923_040 Hb_000923_040 Hb_000104_080--Hb_000923_040 Hb_028707_090 Hb_028707_090 Hb_000104_080--Hb_028707_090 Hb_001584_290 Hb_001584_290 Hb_000104_080--Hb_001584_290 Hb_000236_280 Hb_000236_280 Hb_000104_080--Hb_000236_280 Hb_000104_080--Hb_008143_030 Hb_023001_020 Hb_023001_020 Hb_000104_080--Hb_023001_020 Hb_004195_280 Hb_004195_280 Hb_010423_020--Hb_004195_280 Hb_002174_060 Hb_002174_060 Hb_010423_020--Hb_002174_060 Hb_010423_020--Hb_009265_080 Hb_000364_060 Hb_000364_060 Hb_010423_020--Hb_000364_060 Hb_134364_010 Hb_134364_010 Hb_010423_020--Hb_134364_010 Hb_008143_030--Hb_001584_290 Hb_108216_040 Hb_108216_040 Hb_008143_030--Hb_108216_040 Hb_000035_040 Hb_000035_040 Hb_008143_030--Hb_000035_040 Hb_000640_320 Hb_000640_320 Hb_008143_030--Hb_000640_320 Hb_002652_040 Hb_002652_040 Hb_008143_030--Hb_002652_040 Hb_009265_080--Hb_002007_350 Hb_009265_080--Hb_008253_010 Hb_009265_080--Hb_002400_180 Hb_000803_300 Hb_000803_300 Hb_009265_080--Hb_000803_300 Hb_009265_080--Hb_004195_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
159.553 39.5702 52.0024 33.6285 143.398 157.204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.6138 50.2978 47.8751 43.3061 38.0585

CAGE analysis