Hb_003010_020

Information

Type -
Description -
Location Contig3010: 7972-11258
Sequence    

Annotation

kegg
ID pop:POPTR_0014s03350g
description hypothetical protein
nr
ID XP_012071691.1
description PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID O48722
description Probable inactive heme oxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=HO2 PE=2 SV=2
trembl
ID A0A067L1M4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04310 PE=4 SV=1
Gene Ontology
ID GO:0009507
description probable inactive heme oxygenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31705: 7921-10911
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003010_020 0.0 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_001416_070 0.0587604388 - - oxidoreductase, putative [Ricinus communis]
3 Hb_032050_040 0.0659797841 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
4 Hb_002273_120 0.067234594 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
5 Hb_003438_050 0.0771258072 - - PREDICTED: rab3 GTPase-activating protein catalytic subunit isoform X2 [Jatropha curcas]
6 Hb_012194_050 0.0812469515 - - Aspartyl aminopeptidase, putative [Ricinus communis]
7 Hb_006909_070 0.0815971654 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_004545_090 0.0818699176 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001488_410 0.082297651 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
10 Hb_000212_240 0.083545695 - - short-chain dehydrogenase, putative [Ricinus communis]
11 Hb_011918_040 0.0838173049 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
12 Hb_004935_030 0.0841523077 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
13 Hb_009529_030 0.0843078267 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
14 Hb_000990_090 0.085295206 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
15 Hb_002785_050 0.0872733907 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
16 Hb_000785_040 0.0881560371 - - PREDICTED: uncharacterized protein LOC105628919 [Jatropha curcas]
17 Hb_000120_920 0.0887861512 - - poly(A) polymerase, putative [Ricinus communis]
18 Hb_000152_260 0.0891150875 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
19 Hb_000362_150 0.0894172167 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
20 Hb_007919_100 0.0897570636 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]

Gene co-expression network

sample Hb_003010_020 Hb_003010_020 Hb_001416_070 Hb_001416_070 Hb_003010_020--Hb_001416_070 Hb_032050_040 Hb_032050_040 Hb_003010_020--Hb_032050_040 Hb_002273_120 Hb_002273_120 Hb_003010_020--Hb_002273_120 Hb_003438_050 Hb_003438_050 Hb_003010_020--Hb_003438_050 Hb_012194_050 Hb_012194_050 Hb_003010_020--Hb_012194_050 Hb_006909_070 Hb_006909_070 Hb_003010_020--Hb_006909_070 Hb_001416_070--Hb_012194_050 Hb_011918_040 Hb_011918_040 Hb_001416_070--Hb_011918_040 Hb_001416_070--Hb_006909_070 Hb_001416_070--Hb_032050_040 Hb_000120_920 Hb_000120_920 Hb_001416_070--Hb_000120_920 Hb_007919_100 Hb_007919_100 Hb_032050_040--Hb_007919_100 Hb_152202_010 Hb_152202_010 Hb_032050_040--Hb_152202_010 Hb_032050_040--Hb_002273_120 Hb_002785_050 Hb_002785_050 Hb_032050_040--Hb_002785_050 Hb_000127_040 Hb_000127_040 Hb_032050_040--Hb_000127_040 Hb_009529_030 Hb_009529_030 Hb_002273_120--Hb_009529_030 Hb_002273_120--Hb_002785_050 Hb_003375_070 Hb_003375_070 Hb_002273_120--Hb_003375_070 Hb_017295_010 Hb_017295_010 Hb_002273_120--Hb_017295_010 Hb_003025_110 Hb_003025_110 Hb_003438_050--Hb_003025_110 Hb_000638_120 Hb_000638_120 Hb_003438_050--Hb_000638_120 Hb_007632_240 Hb_007632_240 Hb_003438_050--Hb_007632_240 Hb_001040_100 Hb_001040_100 Hb_003438_050--Hb_001040_100 Hb_023480_010 Hb_023480_010 Hb_003438_050--Hb_023480_010 Hb_012194_050--Hb_152202_010 Hb_005078_010 Hb_005078_010 Hb_012194_050--Hb_005078_010 Hb_000362_150 Hb_000362_150 Hb_012194_050--Hb_000362_150 Hb_012194_050--Hb_032050_040 Hb_004097_070 Hb_004097_070 Hb_006909_070--Hb_004097_070 Hb_000107_210 Hb_000107_210 Hb_006909_070--Hb_000107_210 Hb_007943_110 Hb_007943_110 Hb_006909_070--Hb_007943_110 Hb_006909_070--Hb_007919_100 Hb_002947_030 Hb_002947_030 Hb_006909_070--Hb_002947_030 Hb_007441_130 Hb_007441_130 Hb_006909_070--Hb_007441_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.76042 4.92467 5.65918 7.8871 8.33829 14.6269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.29518 4.90144 3.78412 6.83041 7.51965

CAGE analysis