Hb_003010_030

Information

Type -
Description -
Location Contig3010: 12015-19309
Sequence    

Annotation

kegg
ID rcu:RCOM_1591490
description ribonuclease p/mrp subunit, putative
nr
ID XP_002510261.1
description ribonuclease p/mrp subunit, putative [Ricinus communis]
swissprot
ID Q2TBM9
description Protein SERAC1 OS=Bos taurus GN=SERAC1 PE=2 SV=1
trembl
ID B9R7G8
description Ribonuclease p/mrp subunit, putative OS=Ricinus communis GN=RCOM_1591490 PE=4 SV=1
Gene Ontology
ID GO:0005622
description ribonuclease p mrp

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31707: 15904-16565
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003010_030 0.0 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
2 Hb_000093_160 0.0521767401 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
3 Hb_096563_010 0.0526388566 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
4 Hb_012008_020 0.0591865027 - - PREDICTED: uncharacterized protein LOC104233229 [Nicotiana sylvestris]
5 Hb_001258_090 0.0594228565 - - PREDICTED: protein spt2-like [Jatropha curcas]
6 Hb_000120_790 0.0617533146 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
7 Hb_000089_220 0.0654277521 - - PREDICTED: protein FAM133-like [Populus euphratica]
8 Hb_005694_110 0.0662868906 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
9 Hb_000300_060 0.066340096 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]
10 Hb_001259_090 0.0678576194 - - hypothetical protein B456_005G056700 [Gossypium raimondii]
11 Hb_000661_250 0.0694375388 - - PREDICTED: RNA-binding protein 8A [Jatropha curcas]
12 Hb_005618_160 0.0701008069 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
13 Hb_000462_140 0.0702172118 - - PREDICTED: dnaJ homolog subfamily C member 28 [Jatropha curcas]
14 Hb_003406_010 0.0708297911 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
15 Hb_005276_210 0.0715174106 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
16 Hb_007218_080 0.0717695048 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
17 Hb_002477_280 0.0720149538 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
18 Hb_001358_030 0.0720336215 - - PREDICTED: 40S ribosomal protein S3-3-like [Populus euphratica]
19 Hb_002391_300 0.0739175833 - - hypothetical protein PHAVU_002G104100g [Phaseolus vulgaris]
20 Hb_001006_140 0.0745605398 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003010_030 Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_003010_030--Hb_000093_160 Hb_096563_010 Hb_096563_010 Hb_003010_030--Hb_096563_010 Hb_012008_020 Hb_012008_020 Hb_003010_030--Hb_012008_020 Hb_001258_090 Hb_001258_090 Hb_003010_030--Hb_001258_090 Hb_000120_790 Hb_000120_790 Hb_003010_030--Hb_000120_790 Hb_000089_220 Hb_000089_220 Hb_003010_030--Hb_000089_220 Hb_003428_030 Hb_003428_030 Hb_000093_160--Hb_003428_030 Hb_000093_160--Hb_096563_010 Hb_004310_150 Hb_004310_150 Hb_000093_160--Hb_004310_150 Hb_000093_160--Hb_000120_790 Hb_000093_160--Hb_001258_090 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_001358_030 Hb_001358_030 Hb_012008_020--Hb_001358_030 Hb_009557_070 Hb_009557_070 Hb_012008_020--Hb_009557_070 Hb_000959_260 Hb_000959_260 Hb_012008_020--Hb_000959_260 Hb_002660_080 Hb_002660_080 Hb_012008_020--Hb_002660_080 Hb_002391_300 Hb_002391_300 Hb_012008_020--Hb_002391_300 Hb_001595_030 Hb_001595_030 Hb_001258_090--Hb_001595_030 Hb_000038_170 Hb_000038_170 Hb_001258_090--Hb_000038_170 Hb_023386_020 Hb_023386_020 Hb_001258_090--Hb_023386_020 Hb_007054_060 Hb_007054_060 Hb_001258_090--Hb_007054_060 Hb_000342_130 Hb_000342_130 Hb_000120_790--Hb_000342_130 Hb_007691_030 Hb_007691_030 Hb_000120_790--Hb_007691_030 Hb_001776_140 Hb_001776_140 Hb_000120_790--Hb_001776_140 Hb_001006_140 Hb_001006_140 Hb_000120_790--Hb_001006_140 Hb_003406_010 Hb_003406_010 Hb_000089_220--Hb_003406_010 Hb_006185_050 Hb_006185_050 Hb_000089_220--Hb_006185_050 Hb_003642_060 Hb_003642_060 Hb_000089_220--Hb_003642_060 Hb_003001_140 Hb_003001_140 Hb_000089_220--Hb_003001_140 Hb_000926_280 Hb_000926_280 Hb_000089_220--Hb_000926_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4503 2.68682 1.84709 2.22803 4.63083 5.5141
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.0077 5.51748 2.93258 2.08139 2.33983

CAGE analysis