Hb_003010_040

Information

Type -
Description -
Location Contig3010: 19680-28549
Sequence    

Annotation

kegg
ID egr:104429956
description patatin-like protein 2
nr
ID KFK30332.1
description hypothetical protein AALP_AA7G248200 [Arabis alpina]
swissprot
ID Q3YJT2
description Patatin-2-Kuras 2 OS=Solanum tuberosum GN=pat2-k2 PE=2 SV=1
trembl
ID A0A0E0J487
description Uncharacterized protein OS=Oryza nivara PE=4 SV=1
Gene Ontology
ID GO:0016787
description patatin-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003010_040 0.0 - - hypothetical protein AALP_AA7G248200 [Arabis alpina]
2 Hb_000813_120 0.0943523514 - - PREDICTED: serine carboxypeptidase-like 18 [Tarenaya hassleriana]
3 Hb_183700_010 0.1014615553 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_000640_270 0.1082404581 - - PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 30 [Jatropha curcas]
5 Hb_117464_010 0.1201373485 - - PREDICTED: flavone 3'-O-methyltransferase 1-like [Jatropha curcas]
6 Hb_039342_030 0.1215083134 - - conserved hypothetical protein [Ricinus communis]
7 Hb_008160_020 0.1224600007 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]
8 Hb_002311_050 0.1269571197 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
9 Hb_001081_020 0.1277931389 - - Cytochrome P450 76C2 [Triticum urartu]
10 Hb_031862_240 0.128144004 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_003581_240 0.1293191933 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_000365_300 0.1295167903 - - PREDICTED: cytochrome P450 714C2-like [Jatropha curcas]
13 Hb_002234_150 0.1299917015 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
14 Hb_012019_030 0.1301757064 - - hypothetical protein POPTR_0005s23360g [Populus trichocarpa]
15 Hb_006478_190 0.1305477492 - - lipid binding protein, putative [Ricinus communis]
16 Hb_000487_170 0.1306486169 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
17 Hb_004195_040 0.1330109702 - - salicylic acid methyl transferase [Capsicum annuum]
18 Hb_010839_070 0.1335712716 - - uncharacterized protein LOC100810725 [Glycine max]
19 Hb_005731_080 0.1345069582 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
20 Hb_004185_040 0.1374606664 - - polygalacturonase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003010_040 Hb_003010_040 Hb_000813_120 Hb_000813_120 Hb_003010_040--Hb_000813_120 Hb_183700_010 Hb_183700_010 Hb_003010_040--Hb_183700_010 Hb_000640_270 Hb_000640_270 Hb_003010_040--Hb_000640_270 Hb_117464_010 Hb_117464_010 Hb_003010_040--Hb_117464_010 Hb_039342_030 Hb_039342_030 Hb_003010_040--Hb_039342_030 Hb_008160_020 Hb_008160_020 Hb_003010_040--Hb_008160_020 Hb_000813_120--Hb_183700_010 Hb_000813_120--Hb_039342_030 Hb_004185_040 Hb_004185_040 Hb_000813_120--Hb_004185_040 Hb_004195_040 Hb_004195_040 Hb_000813_120--Hb_004195_040 Hb_012019_030 Hb_012019_030 Hb_000813_120--Hb_012019_030 Hb_001173_050 Hb_001173_050 Hb_000813_120--Hb_001173_050 Hb_003581_240 Hb_003581_240 Hb_183700_010--Hb_003581_240 Hb_002766_040 Hb_002766_040 Hb_183700_010--Hb_002766_040 Hb_007735_010 Hb_007735_010 Hb_183700_010--Hb_007735_010 Hb_014113_010 Hb_014113_010 Hb_183700_010--Hb_014113_010 Hb_000640_270--Hb_117464_010 Hb_000640_270--Hb_008160_020 Hb_010839_070 Hb_010839_070 Hb_000640_270--Hb_010839_070 Hb_001081_020 Hb_001081_020 Hb_000640_270--Hb_001081_020 Hb_071381_010 Hb_071381_010 Hb_000640_270--Hb_071381_010 Hb_000640_270--Hb_039342_030 Hb_117464_010--Hb_008160_020 Hb_117464_010--Hb_001081_020 Hb_117464_010--Hb_010839_070 Hb_117464_010--Hb_071381_010 Hb_117464_010--Hb_039342_030 Hb_016172_010 Hb_016172_010 Hb_039342_030--Hb_016172_010 Hb_006196_020 Hb_006196_020 Hb_039342_030--Hb_006196_020 Hb_008705_070 Hb_008705_070 Hb_039342_030--Hb_008705_070 Hb_042664_010 Hb_042664_010 Hb_039342_030--Hb_042664_010 Hb_002615_050 Hb_002615_050 Hb_039342_030--Hb_002615_050 Hb_000160_230 Hb_000160_230 Hb_039342_030--Hb_000160_230 Hb_008160_020--Hb_001081_020 Hb_008160_020--Hb_071381_010 Hb_008160_020--Hb_010839_070 Hb_008160_020--Hb_039342_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.171996 0.0317616 0.0049818 0 0.0129247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.709094 0

CAGE analysis