Hb_003011_040

Information

Type -
Description -
Location Contig3011: 43020-50435
Sequence    

Annotation

kegg
ID cit:102629536
description uncharacterized LOC102629536
nr
ID XP_006470537.1
description PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID V4UBB5
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016602mg PE=4 SV=1
Gene Ontology
ID GO:0071816
description tail-anchored protein insertion receptor wrb-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31711: 43143-64168 , PASA_asmbl_31712: 43043-64002
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003011_040 0.0 - - PREDICTED: uncharacterized protein LOC102629536 isoform X2 [Citrus sinensis]
2 Hb_004223_220 0.0750609741 - - PREDICTED: uncharacterized protein LOC105635366 isoform X1 [Jatropha curcas]
3 Hb_000155_180 0.082056636 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
4 Hb_093666_020 0.083479944 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
5 Hb_010180_010 0.0902621436 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
6 Hb_005389_150 0.0919416542 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001269_320 0.0927470112 - - 40S ribosomal protein S12A [Hevea brasiliensis]
8 Hb_003878_010 0.09758234 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
9 Hb_086703_010 0.0976990811 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
10 Hb_184570_010 0.0996560902 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
11 Hb_004502_020 0.1005211267 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
12 Hb_003266_050 0.1007039131 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
13 Hb_007617_050 0.1014389334 - - Isoflavone reductase, putative [Ricinus communis]
14 Hb_000771_100 0.1022026174 - - Os06g0527300 [Oryza sativa Japonica Group]
15 Hb_002374_020 0.1052632434 - - PREDICTED: protein KRTCAP2 homolog [Jatropha curcas]
16 Hb_003874_020 0.1080300456 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
17 Hb_002890_140 0.1085255503 - - PREDICTED: uncharacterized protein LOC100263805 [Vitis vinifera]
18 Hb_002596_040 0.109629179 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
19 Hb_001998_230 0.1109085825 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
20 Hb_000505_140 0.1114818068 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]

Gene co-expression network

sample Hb_003011_040 Hb_003011_040 Hb_004223_220 Hb_004223_220 Hb_003011_040--Hb_004223_220 Hb_000155_180 Hb_000155_180 Hb_003011_040--Hb_000155_180 Hb_093666_020 Hb_093666_020 Hb_003011_040--Hb_093666_020 Hb_010180_010 Hb_010180_010 Hb_003011_040--Hb_010180_010 Hb_005389_150 Hb_005389_150 Hb_003011_040--Hb_005389_150 Hb_001269_320 Hb_001269_320 Hb_003011_040--Hb_001269_320 Hb_004223_220--Hb_093666_020 Hb_004502_020 Hb_004502_020 Hb_004223_220--Hb_004502_020 Hb_002296_040 Hb_002296_040 Hb_004223_220--Hb_002296_040 Hb_004223_220--Hb_000155_180 Hb_184570_010 Hb_184570_010 Hb_004223_220--Hb_184570_010 Hb_001377_180 Hb_001377_180 Hb_000155_180--Hb_001377_180 Hb_000771_100 Hb_000771_100 Hb_000155_180--Hb_000771_100 Hb_000155_180--Hb_004502_020 Hb_086703_010 Hb_086703_010 Hb_000155_180--Hb_086703_010 Hb_002272_260 Hb_002272_260 Hb_000155_180--Hb_002272_260 Hb_001279_070 Hb_001279_070 Hb_093666_020--Hb_001279_070 Hb_093666_020--Hb_004502_020 Hb_093666_020--Hb_001269_320 Hb_000505_140 Hb_000505_140 Hb_093666_020--Hb_000505_140 Hb_143398_010 Hb_143398_010 Hb_010180_010--Hb_143398_010 Hb_001998_230 Hb_001998_230 Hb_010180_010--Hb_001998_230 Hb_004306_020 Hb_004306_020 Hb_010180_010--Hb_004306_020 Hb_002890_140 Hb_002890_140 Hb_010180_010--Hb_002890_140 Hb_000329_030 Hb_000329_030 Hb_010180_010--Hb_000329_030 Hb_010180_020 Hb_010180_020 Hb_010180_010--Hb_010180_020 Hb_003266_050 Hb_003266_050 Hb_005389_150--Hb_003266_050 Hb_001009_040 Hb_001009_040 Hb_005389_150--Hb_001009_040 Hb_000169_010 Hb_000169_010 Hb_005389_150--Hb_000169_010 Hb_005389_150--Hb_001269_320 Hb_010691_060 Hb_010691_060 Hb_005389_150--Hb_010691_060 Hb_001269_320--Hb_003266_050 Hb_007229_070 Hb_007229_070 Hb_001269_320--Hb_007229_070 Hb_004440_050 Hb_004440_050 Hb_001269_320--Hb_004440_050 Hb_001369_660 Hb_001369_660 Hb_001269_320--Hb_001369_660 Hb_001269_320--Hb_001279_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3095 3.6526 5.65264 15.0521 15.6036 27.0112
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.4623 25.3982 5.93949 10.0045 5.29675

CAGE analysis