Hb_003012_010

Information

Type -
Description -
Location Contig3012: 12468-13280
Sequence    

Annotation

kegg
ID rcu:RCOM_0769800
description hypothetical protein
nr
ID XP_002533439.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID O22227
description Protein MIZU-KUSSEI 1 OS=Arabidopsis thaliana GN=MIZ1 PE=1 SV=1
trembl
ID B9T5C0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0769800 PE=4 SV=1
Gene Ontology
ID GO:0032541
description protein mizu-kussei 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003012_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002422_010 0.0658779344 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
3 Hb_000286_210 0.0895929265 - - hypothetical protein EUGRSUZ_C00018 [Eucalyptus grandis]
4 Hb_151616_010 0.0984158448 - - -
5 Hb_001808_010 0.1108128778 - - PREDICTED: dirigent protein 23-like [Jatropha curcas]
6 Hb_002639_120 0.1202669694 - - unnamed protein product [Vitis vinifera]
7 Hb_001318_180 0.12445366 - - PREDICTED: protein NIM1-INTERACTING 1 [Jatropha curcas]
8 Hb_000167_090 0.124663688 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004007_190 0.1257495384 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein AZF2-like [Jatropha curcas]
10 Hb_003529_010 0.1263544164 - - PREDICTED: disease resistance protein RPS6-like [Jatropha curcas]
11 Hb_002869_040 0.1268857299 - - PREDICTED: metal tolerance protein 4 [Jatropha curcas]
12 Hb_001957_050 0.128258094 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
13 Hb_002548_010 0.1322097458 - - hypothetical protein EUGRSUZ_L00530 [Eucalyptus grandis]
14 Hb_001059_050 0.1331545035 - - PREDICTED: putative F-box/LRR-repeat protein At3g18150 [Jatropha curcas]
15 Hb_001227_010 0.1341836725 transcription factor TF Family: TCP hypothetical protein POPTR_0015s03140g [Populus trichocarpa]
16 Hb_006890_050 0.1384648024 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
17 Hb_000769_050 0.1422503556 - - hypothetical protein CISIN_1g030637mg [Citrus sinensis]
18 Hb_021443_020 0.1430544257 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
19 Hb_002025_120 0.1459114285 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105634212 [Jatropha curcas]
20 Hb_009620_010 0.1467738701 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003012_010 Hb_003012_010 Hb_002422_010 Hb_002422_010 Hb_003012_010--Hb_002422_010 Hb_000286_210 Hb_000286_210 Hb_003012_010--Hb_000286_210 Hb_151616_010 Hb_151616_010 Hb_003012_010--Hb_151616_010 Hb_001808_010 Hb_001808_010 Hb_003012_010--Hb_001808_010 Hb_002639_120 Hb_002639_120 Hb_003012_010--Hb_002639_120 Hb_001318_180 Hb_001318_180 Hb_003012_010--Hb_001318_180 Hb_002422_010--Hb_151616_010 Hb_000167_090 Hb_000167_090 Hb_002422_010--Hb_000167_090 Hb_002422_010--Hb_000286_210 Hb_002422_010--Hb_001808_010 Hb_039410_010 Hb_039410_010 Hb_002422_010--Hb_039410_010 Hb_000286_210--Hb_151616_010 Hb_001059_050 Hb_001059_050 Hb_000286_210--Hb_001059_050 Hb_021443_020 Hb_021443_020 Hb_000286_210--Hb_021443_020 Hb_001213_080 Hb_001213_080 Hb_000286_210--Hb_001213_080 Hb_000286_210--Hb_002639_120 Hb_151616_010--Hb_001059_050 Hb_151616_010--Hb_002639_120 Hb_132517_010 Hb_132517_010 Hb_151616_010--Hb_132517_010 Hb_014214_010 Hb_014214_010 Hb_001808_010--Hb_014214_010 Hb_000433_060 Hb_000433_060 Hb_001808_010--Hb_000433_060 Hb_000373_110 Hb_000373_110 Hb_001808_010--Hb_000373_110 Hb_005054_010 Hb_005054_010 Hb_001808_010--Hb_005054_010 Hb_006890_050 Hb_006890_050 Hb_002639_120--Hb_006890_050 Hb_002025_120 Hb_002025_120 Hb_002639_120--Hb_002025_120 Hb_001227_010 Hb_001227_010 Hb_002639_120--Hb_001227_010 Hb_000702_040 Hb_000702_040 Hb_002639_120--Hb_000702_040 Hb_004007_190 Hb_004007_190 Hb_001318_180--Hb_004007_190 Hb_001675_260 Hb_001675_260 Hb_001318_180--Hb_001675_260 Hb_003529_010 Hb_003529_010 Hb_001318_180--Hb_003529_010 Hb_000021_010 Hb_000021_010 Hb_001318_180--Hb_000021_010 Hb_003906_150 Hb_003906_150 Hb_001318_180--Hb_003906_150 Hb_027402_110 Hb_027402_110 Hb_001318_180--Hb_027402_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.08235 0.249361 3.00736 0.0269401 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.126084 0

CAGE analysis