Hb_003014_010

Information

Type transcription factor
Description TF Family: HB
Location Contig3014: 66832-68246
Sequence    

Annotation

kegg
ID pop:POPTR_0017s11800g
description POPTRDRAFT_1105227; hypothetical protein
nr
ID XP_002323851.2
description hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
swissprot
ID Q8LAT0
description Homeobox-leucine zipper protein ATHB-20 OS=Arabidopsis thaliana GN=ATHB-20 PE=2 SV=2
trembl
ID B9IJW4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s11800g PE=4 SV=2
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein hat7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003014_010 0.0 transcription factor TF Family: HB hypothetical protein POPTR_0017s11800g [Populus trichocarpa]
2 Hb_001892_040 0.1207822429 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
3 Hb_005976_030 0.1209128711 - - PREDICTED: uncharacterized protein LOC105639715 [Jatropha curcas]
4 Hb_001591_020 0.1211096272 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
5 Hb_000258_010 0.1213325298 - - lipid transfer precursor protein [Hevea brasiliensis]
6 Hb_000733_170 0.1217459008 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
7 Hb_000530_080 0.1222322562 - - PREDICTED: serine/threonine-protein kinase D6PKL2-like [Jatropha curcas]
8 Hb_004032_170 0.1225345252 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
9 Hb_007432_040 0.1226670933 transcription factor TF Family: bHLH PREDICTED: transcription factor BEE 3-like [Jatropha curcas]
10 Hb_069237_010 0.1232043436 - - -
11 Hb_003729_040 0.1245035916 - - o-methyltransferase, putative [Ricinus communis]
12 Hb_153199_010 0.1251146407 - - -
13 Hb_130357_010 0.1255948597 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
14 Hb_001347_020 0.1288811153 - - PREDICTED: cytochrome P450 86B1-like [Populus euphratica]
15 Hb_002235_340 0.1291005572 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
16 Hb_000422_100 0.1293257801 - - PREDICTED: TMV resistance protein N-like [Populus euphratica]
17 Hb_000325_090 0.1293689626 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]
18 Hb_001817_050 0.1301695072 transcription factor TF Family: C2H2 PREDICTED: transcriptional regulator SUPERMAN [Jatropha curcas]
19 Hb_111442_010 0.1303558124 desease resistance Gene Name: AAA_16 LRR and NB-ARC domains-containing disease resistance protein, putative [Theobroma cacao]
20 Hb_000389_130 0.1305828774 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_003014_010 Hb_003014_010 Hb_001892_040 Hb_001892_040 Hb_003014_010--Hb_001892_040 Hb_005976_030 Hb_005976_030 Hb_003014_010--Hb_005976_030 Hb_001591_020 Hb_001591_020 Hb_003014_010--Hb_001591_020 Hb_000258_010 Hb_000258_010 Hb_003014_010--Hb_000258_010 Hb_000733_170 Hb_000733_170 Hb_003014_010--Hb_000733_170 Hb_000530_080 Hb_000530_080 Hb_003014_010--Hb_000530_080 Hb_001892_040--Hb_001591_020 Hb_001892_040--Hb_000733_170 Hb_001892_040--Hb_005976_030 Hb_001892_040--Hb_000530_080 Hb_004032_170 Hb_004032_170 Hb_001892_040--Hb_004032_170 Hb_007432_040 Hb_007432_040 Hb_001892_040--Hb_007432_040 Hb_005976_030--Hb_000258_010 Hb_069237_010 Hb_069237_010 Hb_005976_030--Hb_069237_010 Hb_005976_030--Hb_001591_020 Hb_003729_040 Hb_003729_040 Hb_005976_030--Hb_003729_040 Hb_005976_030--Hb_000733_170 Hb_001591_020--Hb_000733_170 Hb_001591_020--Hb_000530_080 Hb_001591_020--Hb_004032_170 Hb_001591_020--Hb_007432_040 Hb_000258_010--Hb_069237_010 Hb_000258_010--Hb_001892_040 Hb_000258_010--Hb_003729_040 Hb_130357_010 Hb_130357_010 Hb_000258_010--Hb_130357_010 Hb_000258_010--Hb_001591_020 Hb_000733_170--Hb_000530_080 Hb_000733_170--Hb_004032_170 Hb_000733_170--Hb_007432_040 Hb_153199_010 Hb_153199_010 Hb_000733_170--Hb_153199_010 Hb_000530_080--Hb_004032_170 Hb_000530_080--Hb_007432_040 Hb_000530_080--Hb_153199_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.157183 5.3812 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.16435 0 0

CAGE analysis