Hb_003016_020

Information

Type -
Description -
Location Contig3016: 13976-17875
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09880g
description POPTRDRAFT_349958A, POPTRDRAFT_349958B; 4-coumarate--CoA ligase family protein
nr
ID XP_012066481.1
description PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
swissprot
ID Q84P24
description 4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2
trembl
ID B9GZT7
description 4-coumarate--CoA ligase family protein OS=Populus trichocarpa GN=POPTR_0003s09880g PE=4 SV=1
Gene Ontology
ID GO:0016874
description 4-coumarate-- ligase-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31746: 13983-16217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003016_020 0.0 - - PREDICTED: 4-coumarate--CoA ligase-like 6 isoform X1 [Jatropha curcas]
2 Hb_013726_020 0.1012704606 - - ara4-interacting protein, putative [Ricinus communis]
3 Hb_001360_040 0.1015929677 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3 isoform X2 [Jatropha curcas]
4 Hb_008511_130 0.1017475589 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
5 Hb_003206_070 0.1055468295 - - organic anion transporter, putative [Ricinus communis]
6 Hb_000620_010 0.1080608094 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
7 Hb_000761_020 0.1088963552 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
8 Hb_000141_250 0.1090484465 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
9 Hb_000390_170 0.1099034132 - - PREDICTED: V-type proton ATPase subunit H [Jatropha curcas]
10 Hb_002835_240 0.1105315656 - - hypothetical protein PRUPE_ppa013861mg [Prunus persica]
11 Hb_000808_050 0.1107224293 - - exonuclease, putative [Ricinus communis]
12 Hb_004324_070 0.1122776502 - - protein phosphatase 2C [Hevea brasiliensis]
13 Hb_000299_040 0.1148509471 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
14 Hb_000010_090 0.1154693435 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
15 Hb_007594_030 0.1165709423 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
16 Hb_027746_010 0.117324073 - - PREDICTED: glycerophosphodiester phosphodiesterase GDPD6 isoform X1 [Jatropha curcas]
17 Hb_002542_020 0.1178000238 - - PREDICTED: uncharacterized protein LOC105634003 isoform X1 [Jatropha curcas]
18 Hb_000618_040 0.1189613194 - - hypothetical protein CICLE_v10027942mg [Citrus clementina]
19 Hb_000676_250 0.1193818347 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
20 Hb_003732_020 0.1195919871 - - PREDICTED: phosphoglucomutase, chloroplastic-like [Populus euphratica]

Gene co-expression network

sample Hb_003016_020 Hb_003016_020 Hb_013726_020 Hb_013726_020 Hb_003016_020--Hb_013726_020 Hb_001360_040 Hb_001360_040 Hb_003016_020--Hb_001360_040 Hb_008511_130 Hb_008511_130 Hb_003016_020--Hb_008511_130 Hb_003206_070 Hb_003206_070 Hb_003016_020--Hb_003206_070 Hb_000620_010 Hb_000620_010 Hb_003016_020--Hb_000620_010 Hb_000761_020 Hb_000761_020 Hb_003016_020--Hb_000761_020 Hb_000656_040 Hb_000656_040 Hb_013726_020--Hb_000656_040 Hb_002835_240 Hb_002835_240 Hb_013726_020--Hb_002835_240 Hb_000347_540 Hb_000347_540 Hb_013726_020--Hb_000347_540 Hb_000815_320 Hb_000815_320 Hb_013726_020--Hb_000815_320 Hb_002998_060 Hb_002998_060 Hb_013726_020--Hb_002998_060 Hb_002168_060 Hb_002168_060 Hb_013726_020--Hb_002168_060 Hb_001396_180 Hb_001396_180 Hb_001360_040--Hb_001396_180 Hb_003732_020 Hb_003732_020 Hb_001360_040--Hb_003732_020 Hb_001360_040--Hb_000761_020 Hb_003376_040 Hb_003376_040 Hb_001360_040--Hb_003376_040 Hb_002685_140 Hb_002685_140 Hb_001360_040--Hb_002685_140 Hb_000436_070 Hb_000436_070 Hb_001360_040--Hb_000436_070 Hb_000141_250 Hb_000141_250 Hb_008511_130--Hb_000141_250 Hb_002997_080 Hb_002997_080 Hb_008511_130--Hb_002997_080 Hb_000230_560 Hb_000230_560 Hb_008511_130--Hb_000230_560 Hb_000390_170 Hb_000390_170 Hb_008511_130--Hb_000390_170 Hb_000618_040 Hb_000618_040 Hb_008511_130--Hb_000618_040 Hb_000094_300 Hb_000094_300 Hb_008511_130--Hb_000094_300 Hb_000409_020 Hb_000409_020 Hb_003206_070--Hb_000409_020 Hb_001818_090 Hb_001818_090 Hb_003206_070--Hb_001818_090 Hb_000676_250 Hb_000676_250 Hb_003206_070--Hb_000676_250 Hb_005663_060 Hb_005663_060 Hb_003206_070--Hb_005663_060 Hb_003177_030 Hb_003177_030 Hb_003206_070--Hb_003177_030 Hb_007441_120 Hb_007441_120 Hb_003206_070--Hb_007441_120 Hb_000120_950 Hb_000120_950 Hb_000620_010--Hb_000120_950 Hb_000620_010--Hb_000436_070 Hb_005662_030 Hb_005662_030 Hb_000620_010--Hb_005662_030 Hb_000009_170 Hb_000009_170 Hb_000620_010--Hb_000009_170 Hb_004724_200 Hb_004724_200 Hb_000620_010--Hb_004724_200 Hb_000699_140 Hb_000699_140 Hb_000620_010--Hb_000699_140 Hb_000761_020--Hb_000620_010 Hb_000001_020 Hb_000001_020 Hb_000761_020--Hb_000001_020 Hb_000761_020--Hb_000436_070 Hb_000836_630 Hb_000836_630 Hb_000761_020--Hb_000836_630 Hb_007064_040 Hb_007064_040 Hb_000761_020--Hb_007064_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.95209 1.30021 5.54178 4.95376 4.78428 6.15497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.87896 4.18322 8.83019 2.8622 2.55689

CAGE analysis