Hb_003018_020

Information

Type -
Description -
Location Contig3018: 8967-11935
Sequence    

Annotation

kegg
ID tcc:TCM_000231
description hypothetical protein
nr
ID XP_012065563.1
description PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LPC8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06503 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31750: 8975-11981 , PASA_asmbl_31752: 9659-10112
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_020 0.0 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
2 Hb_003226_100 0.0596728919 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
3 Hb_004157_030 0.0617397527 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
4 Hb_174865_010 0.0618690754 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
5 Hb_000506_070 0.0622894265 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
6 Hb_001141_140 0.0643512382 - - 20S proteasome beta subunit D3 [Hevea brasiliensis]
7 Hb_000836_470 0.0680735606 - - -
8 Hb_000735_040 0.068745455 - - 60S ribosomal protein L32A [Hevea brasiliensis]
9 Hb_143496_010 0.0729271013 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
10 Hb_001016_150 0.0766199909 - - Rop1 [Hevea brasiliensis]
11 Hb_026053_020 0.0800487218 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
12 Hb_003018_010 0.0800503257 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
13 Hb_000676_160 0.0816309747 - - folate carrier protein, putative [Ricinus communis]
14 Hb_007441_300 0.0820370149 - - ATP binding protein, putative [Ricinus communis]
15 Hb_001863_430 0.0827795069 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
16 Hb_000189_240 0.086490169 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
17 Hb_002900_160 0.0867987884 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
18 Hb_010175_040 0.0869561277 - - PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Jatropha curcas]
19 Hb_009476_020 0.0886996027 - - tryptophan biosynthesis protein, putative [Ricinus communis]
20 Hb_002798_020 0.0887361213 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]

Gene co-expression network

sample Hb_003018_020 Hb_003018_020 Hb_003226_100 Hb_003226_100 Hb_003018_020--Hb_003226_100 Hb_004157_030 Hb_004157_030 Hb_003018_020--Hb_004157_030 Hb_174865_010 Hb_174865_010 Hb_003018_020--Hb_174865_010 Hb_000506_070 Hb_000506_070 Hb_003018_020--Hb_000506_070 Hb_001141_140 Hb_001141_140 Hb_003018_020--Hb_001141_140 Hb_000836_470 Hb_000836_470 Hb_003018_020--Hb_000836_470 Hb_000920_110 Hb_000920_110 Hb_003226_100--Hb_000920_110 Hb_003226_100--Hb_004157_030 Hb_002056_050 Hb_002056_050 Hb_003226_100--Hb_002056_050 Hb_001616_040 Hb_001616_040 Hb_003226_100--Hb_001616_040 Hb_143496_010 Hb_143496_010 Hb_003226_100--Hb_143496_010 Hb_001814_050 Hb_001814_050 Hb_004157_030--Hb_001814_050 Hb_000134_070 Hb_000134_070 Hb_004157_030--Hb_000134_070 Hb_004157_030--Hb_000506_070 Hb_004157_030--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_174865_010--Hb_000735_040 Hb_000676_160 Hb_000676_160 Hb_174865_010--Hb_000676_160 Hb_179296_010 Hb_179296_010 Hb_174865_010--Hb_179296_010 Hb_000317_070 Hb_000317_070 Hb_174865_010--Hb_000317_070 Hb_007441_300 Hb_007441_300 Hb_174865_010--Hb_007441_300 Hb_000506_070--Hb_000735_040 Hb_000062_650 Hb_000062_650 Hb_000506_070--Hb_000062_650 Hb_000506_070--Hb_003226_100 Hb_000506_070--Hb_001141_140 Hb_001863_430 Hb_001863_430 Hb_000506_070--Hb_001863_430 Hb_006925_040 Hb_006925_040 Hb_001141_140--Hb_006925_040 Hb_001141_140--Hb_000735_040 Hb_010175_040 Hb_010175_040 Hb_001141_140--Hb_010175_040 Hb_001141_140--Hb_003226_100 Hb_007044_130 Hb_007044_130 Hb_001141_140--Hb_007044_130 Hb_001728_030 Hb_001728_030 Hb_000836_470--Hb_001728_030 Hb_002811_170 Hb_002811_170 Hb_000836_470--Hb_002811_170 Hb_003018_010 Hb_003018_010 Hb_000836_470--Hb_003018_010 Hb_002798_020 Hb_002798_020 Hb_000836_470--Hb_002798_020 Hb_000836_470--Hb_002056_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.89712 2.71856 9.77171 9.50447 6.28911 7.21721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.7562 27.809 7.9881 8.32586 4.62438

CAGE analysis