Hb_003018_030

Information

Type -
Description -
Location Contig3018: 13051-14172
Sequence    

Annotation

kegg
ID cit:102613014
description GDP-mannose 4,6 dehydratase 2-like
nr
ID XP_012065573.1
description PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
swissprot
ID P93031
description GDP-mannose 4,6 dehydratase 2 OS=Arabidopsis thaliana GN=MUR1 PE=1 SV=3
trembl
ID A0A067LE53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06504 PE=3 SV=1
Gene Ontology
ID GO:0008446
description gdp-mannose dehydratase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31753: 12880-14168
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_030 0.0 - - PREDICTED: GDP-mannose 4,6 dehydratase 1 [Jatropha curcas]
2 Hb_000156_090 0.0741901604 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS3 isoform X1 [Jatropha curcas]
3 Hb_002965_050 0.0793160013 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR2 [Jatropha curcas]
4 Hb_000866_140 0.0808764816 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
5 Hb_004319_050 0.0812415059 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
6 Hb_000034_110 0.082795974 - - sentrin/sumo-specific protease, putative [Ricinus communis]
7 Hb_003428_090 0.083153568 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
8 Hb_000890_160 0.0833122733 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
9 Hb_000421_110 0.0843917162 - - PREDICTED: V-type proton ATPase subunit a1 isoform X2 [Jatropha curcas]
10 Hb_033152_090 0.0853560327 - - PREDICTED: serine/threonine-protein kinase SRK2E isoform X2 [Gossypium raimondii]
11 Hb_000261_280 0.0860355395 - - BnaA10g23810D [Brassica napus]
12 Hb_005288_140 0.0860949755 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
13 Hb_003777_130 0.0872656049 - - PREDICTED: uncharacterized protein LOC105640939 [Jatropha curcas]
14 Hb_000270_700 0.0894433593 - - PREDICTED: protease Do-like 9 [Populus euphratica]
15 Hb_000418_050 0.0903597707 - - PREDICTED: uncharacterized protein LOC105636892 [Jatropha curcas]
16 Hb_060094_010 0.0911569116 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X2 [Jatropha curcas]
17 Hb_000956_040 0.0917427379 - - PREDICTED: probable E3 ubiquitin-protein ligase HIP1 [Jatropha curcas]
18 Hb_000258_420 0.0926487016 - - sucrose transporter 2A [Hevea brasiliensis]
19 Hb_009372_020 0.0936767675 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
20 Hb_008725_050 0.0937279067 - - syntaxin, putative [Ricinus communis]

Gene co-expression network

sample Hb_003018_030 Hb_003018_030 Hb_000156_090 Hb_000156_090 Hb_003018_030--Hb_000156_090 Hb_002965_050 Hb_002965_050 Hb_003018_030--Hb_002965_050 Hb_000866_140 Hb_000866_140 Hb_003018_030--Hb_000866_140 Hb_004319_050 Hb_004319_050 Hb_003018_030--Hb_004319_050 Hb_000034_110 Hb_000034_110 Hb_003018_030--Hb_000034_110 Hb_003428_090 Hb_003428_090 Hb_003018_030--Hb_003428_090 Hb_000156_090--Hb_002965_050 Hb_002900_120 Hb_002900_120 Hb_000156_090--Hb_002900_120 Hb_000156_090--Hb_003428_090 Hb_008725_050 Hb_008725_050 Hb_000156_090--Hb_008725_050 Hb_000638_280 Hb_000638_280 Hb_000156_090--Hb_000638_280 Hb_002876_210 Hb_002876_210 Hb_002965_050--Hb_002876_210 Hb_002965_050--Hb_002900_120 Hb_060094_010 Hb_060094_010 Hb_002965_050--Hb_060094_010 Hb_000815_310 Hb_000815_310 Hb_002965_050--Hb_000815_310 Hb_000711_010 Hb_000711_010 Hb_002965_050--Hb_000711_010 Hb_000866_140--Hb_003428_090 Hb_000890_160 Hb_000890_160 Hb_000866_140--Hb_000890_160 Hb_000866_140--Hb_000156_090 Hb_000866_140--Hb_008725_050 Hb_002107_100 Hb_002107_100 Hb_000866_140--Hb_002107_100 Hb_005288_140 Hb_005288_140 Hb_004319_050--Hb_005288_140 Hb_004526_010 Hb_004526_010 Hb_004319_050--Hb_004526_010 Hb_000796_120 Hb_000796_120 Hb_004319_050--Hb_000796_120 Hb_002903_140 Hb_002903_140 Hb_004319_050--Hb_002903_140 Hb_152910_010 Hb_152910_010 Hb_004319_050--Hb_152910_010 Hb_011249_060 Hb_011249_060 Hb_004319_050--Hb_011249_060 Hb_000270_700 Hb_000270_700 Hb_000034_110--Hb_000270_700 Hb_000956_040 Hb_000956_040 Hb_000034_110--Hb_000956_040 Hb_000260_760 Hb_000260_760 Hb_000034_110--Hb_000260_760 Hb_009178_010 Hb_009178_010 Hb_000034_110--Hb_009178_010 Hb_002686_410 Hb_002686_410 Hb_000034_110--Hb_002686_410 Hb_005403_010 Hb_005403_010 Hb_000034_110--Hb_005403_010 Hb_003687_120 Hb_003687_120 Hb_003428_090--Hb_003687_120 Hb_003428_090--Hb_060094_010 Hb_002686_150 Hb_002686_150 Hb_003428_090--Hb_002686_150 Hb_003428_090--Hb_000890_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1272 67.1351 62.3944 51.4481 21.1578 12.1943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.5645 15.7097 19.3059 33.6445 27.0347

CAGE analysis