Hb_003018_050

Information

Type -
Description -
Location Contig3018: 26926-29547
Sequence    

Annotation

kegg
ID tcc:TCM_000228
description Peptidylprolyl cis/trans isomerase
nr
ID XP_012065595.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
swissprot
ID Q94G00
description Peptidyl-prolyl cis-trans isomerase Pin1 OS=Malus domestica GN=PIN1 PE=2 SV=1
trembl
ID A0A067LQA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06507 PE=4 SV=1
Gene Ontology
ID GO:0005783
description peptidyl-prolyl cis-trans isomerase pin1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31756: 26617-29696
cDNA
(Sanger)
(ID:Location)		 017_K16.ab1: 29540-29696 , 021_H17.ab1: 26763-29654

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_050 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
2 Hb_002631_020 0.0602831129 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
3 Hb_006452_040 0.0615870134 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
4 Hb_004125_110 0.0735989677 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
5 Hb_001158_150 0.07630282 - - hypothetical protein JCGZ_26407 [Jatropha curcas]
6 Hb_130235_010 0.0769989596 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
7 Hb_000122_020 0.080517987 - - PREDICTED: alpha-soluble NSF attachment protein 2 [Jatropha curcas]
8 Hb_001882_070 0.0875149564 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634911 [Jatropha curcas]
9 Hb_006915_040 0.0881616153 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
10 Hb_004449_200 0.0891018784 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
11 Hb_003226_210 0.0931395447 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
12 Hb_000084_260 0.0946039905 - - PREDICTED: replication protein A 14 kDa subunit A-like [Jatropha curcas]
13 Hb_000441_190 0.095369154 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
14 Hb_004659_060 0.0972655349 - - RAS-related GTP-binding family protein [Populus trichocarpa]
15 Hb_001842_040 0.0978975939 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
16 Hb_003376_190 0.0984524806 - - syntaxin, putative [Ricinus communis]
17 Hb_001221_310 0.1015382028 - - sec61 gamma subunit, putative [Ricinus communis]
18 Hb_017491_060 0.1020379021 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
19 Hb_001155_040 0.103044182 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
20 Hb_001461_010 0.10406766 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_003018_050 Hb_003018_050 Hb_002631_020 Hb_002631_020 Hb_003018_050--Hb_002631_020 Hb_006452_040 Hb_006452_040 Hb_003018_050--Hb_006452_040 Hb_004125_110 Hb_004125_110 Hb_003018_050--Hb_004125_110 Hb_001158_150 Hb_001158_150 Hb_003018_050--Hb_001158_150 Hb_130235_010 Hb_130235_010 Hb_003018_050--Hb_130235_010 Hb_000122_020 Hb_000122_020 Hb_003018_050--Hb_000122_020 Hb_004449_200 Hb_004449_200 Hb_002631_020--Hb_004449_200 Hb_002631_020--Hb_006452_040 Hb_002631_020--Hb_000122_020 Hb_004374_140 Hb_004374_140 Hb_002631_020--Hb_004374_140 Hb_001191_090 Hb_001191_090 Hb_002631_020--Hb_001191_090 Hb_001155_040 Hb_001155_040 Hb_006452_040--Hb_001155_040 Hb_007317_160 Hb_007317_160 Hb_006452_040--Hb_007317_160 Hb_001221_310 Hb_001221_310 Hb_006452_040--Hb_001221_310 Hb_005463_140 Hb_005463_140 Hb_006452_040--Hb_005463_140 Hb_003226_210 Hb_003226_210 Hb_004125_110--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_004125_110--Hb_001214_160 Hb_000997_120 Hb_000997_120 Hb_004125_110--Hb_000997_120 Hb_000134_070 Hb_000134_070 Hb_004125_110--Hb_000134_070 Hb_002660_030 Hb_002660_030 Hb_004125_110--Hb_002660_030 Hb_005278_020 Hb_005278_020 Hb_001158_150--Hb_005278_020 Hb_001842_040 Hb_001842_040 Hb_001158_150--Hb_001842_040 Hb_001158_150--Hb_002631_020 Hb_000364_020 Hb_000364_020 Hb_001158_150--Hb_000364_020 Hb_001158_150--Hb_006452_040 Hb_130235_010--Hb_004125_110 Hb_001054_100 Hb_001054_100 Hb_130235_010--Hb_001054_100 Hb_007735_030 Hb_007735_030 Hb_130235_010--Hb_007735_030 Hb_140543_010 Hb_140543_010 Hb_130235_010--Hb_140543_010 Hb_001754_070 Hb_001754_070 Hb_130235_010--Hb_001754_070 Hb_000122_020--Hb_004449_200 Hb_001307_090 Hb_001307_090 Hb_000122_020--Hb_001307_090 Hb_001461_010 Hb_001461_010 Hb_000122_020--Hb_001461_010 Hb_004659_060 Hb_004659_060 Hb_000122_020--Hb_004659_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
166.132 69.923 108.191 399.24 137.725 262.208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
498.812 753.128 356.513 177.286 83.6704

CAGE analysis