Hb_003018_120

Information

Type -
Description -
Location Contig3018: 56570-63121
Sequence    

Annotation

kegg
ID tcc:TCM_039217
description Small nuclear ribonucleoprotein F
nr
ID XP_012065638.1
description PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
swissprot
ID Q9SUM2
description Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1
trembl
ID A0A061GXN6
description Small nuclear ribonucleoprotein F OS=Theobroma cacao GN=TCM_039217 PE=3 SV=1
Gene Ontology
ID GO:0005681
description probable small nuclear ribonucleoprotein f

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31762: 56562-62948
cDNA
(Sanger)
(ID:Location)		 006_L01.ab1: 56562-62884 , 049_A17.ab1: 56562-62884

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_120 0.0 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
2 Hb_002518_050 0.0672105134 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
3 Hb_011381_060 0.0795974655 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
4 Hb_000798_030 0.080221586 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
5 Hb_001377_150 0.0832966492 - - hypothetical protein JCGZ_14266 [Jatropha curcas]
6 Hb_000023_230 0.0833380506 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
7 Hb_004204_120 0.0837941837 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
8 Hb_001235_190 0.0848356573 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
9 Hb_012573_070 0.086269555 - - conserved hypothetical protein [Ricinus communis]
10 Hb_077354_010 0.0886604045 - - PREDICTED: uncharacterized protein LOC105637567 [Jatropha curcas]
11 Hb_000510_110 0.0910303393 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
12 Hb_000970_010 0.0910753747 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
13 Hb_007741_050 0.0938207836 - - vesicle-associated membrane protein, putative [Ricinus communis]
14 Hb_000057_070 0.0941394955 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
15 Hb_181288_010 0.0945654774 - - rac-GTP binding protein, putative [Ricinus communis]
16 Hb_070986_010 0.0945987233 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
17 Hb_000948_210 0.0946092139 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
18 Hb_010407_040 0.094666255 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
19 Hb_000160_130 0.0953596443 - - PREDICTED: uncharacterized protein LOC105648215 [Jatropha curcas]
20 Hb_004116_080 0.0957325236 - - ATATH9, putative [Ricinus communis]

Gene co-expression network

sample Hb_003018_120 Hb_003018_120 Hb_002518_050 Hb_002518_050 Hb_003018_120--Hb_002518_050 Hb_011381_060 Hb_011381_060 Hb_003018_120--Hb_011381_060 Hb_000798_030 Hb_000798_030 Hb_003018_120--Hb_000798_030 Hb_001377_150 Hb_001377_150 Hb_003018_120--Hb_001377_150 Hb_000023_230 Hb_000023_230 Hb_003018_120--Hb_000023_230 Hb_004204_120 Hb_004204_120 Hb_003018_120--Hb_004204_120 Hb_000510_110 Hb_000510_110 Hb_002518_050--Hb_000510_110 Hb_012573_070 Hb_012573_070 Hb_002518_050--Hb_012573_070 Hb_165132_010 Hb_165132_010 Hb_002518_050--Hb_165132_010 Hb_000970_010 Hb_000970_010 Hb_002518_050--Hb_000970_010 Hb_001818_020 Hb_001818_020 Hb_002518_050--Hb_001818_020 Hb_007154_020 Hb_007154_020 Hb_011381_060--Hb_007154_020 Hb_145880_030 Hb_145880_030 Hb_011381_060--Hb_145880_030 Hb_010407_040 Hb_010407_040 Hb_011381_060--Hb_010407_040 Hb_002374_170 Hb_002374_170 Hb_011381_060--Hb_002374_170 Hb_002045_040 Hb_002045_040 Hb_011381_060--Hb_002045_040 Hb_028841_030 Hb_028841_030 Hb_011381_060--Hb_028841_030 Hb_000417_110 Hb_000417_110 Hb_000798_030--Hb_000417_110 Hb_070986_010 Hb_070986_010 Hb_000798_030--Hb_070986_010 Hb_000634_050 Hb_000634_050 Hb_000798_030--Hb_000634_050 Hb_000045_190 Hb_000045_190 Hb_000798_030--Hb_000045_190 Hb_007741_050 Hb_007741_050 Hb_000798_030--Hb_007741_050 Hb_000798_030--Hb_004204_120 Hb_002893_060 Hb_002893_060 Hb_001377_150--Hb_002893_060 Hb_004297_070 Hb_004297_070 Hb_001377_150--Hb_004297_070 Hb_000573_070 Hb_000573_070 Hb_001377_150--Hb_000573_070 Hb_001377_150--Hb_002518_050 Hb_000933_180 Hb_000933_180 Hb_001377_150--Hb_000933_180 Hb_023226_040 Hb_023226_040 Hb_000023_230--Hb_023226_040 Hb_001257_080 Hb_001257_080 Hb_000023_230--Hb_001257_080 Hb_002529_100 Hb_002529_100 Hb_000023_230--Hb_002529_100 Hb_004657_050 Hb_004657_050 Hb_000023_230--Hb_004657_050 Hb_000023_230--Hb_004204_120 Hb_002685_190 Hb_002685_190 Hb_004204_120--Hb_002685_190 Hb_002030_040 Hb_002030_040 Hb_004204_120--Hb_002030_040 Hb_001235_190 Hb_001235_190 Hb_004204_120--Hb_001235_190 Hb_004204_120--Hb_070986_010 Hb_000120_750 Hb_000120_750 Hb_004204_120--Hb_000120_750
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
199.905 56.3814 96.442 61.6769 96.5324 127.215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
269.464 333.522 107.717 63.6646 34.1368

CAGE analysis