Hb_003018_130

Information

Type -
Description -
Location Contig3018: 63741-67129
Sequence    

Annotation

kegg
ID rcu:RCOM_0017860
description hypothetical protein
nr
ID XP_012065650.1
description PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06511 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31763: 63736-67059
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_130 0.0 - - PREDICTED: uncharacterized protein LOC105628777 [Jatropha curcas]
2 Hb_002823_030 0.0614567179 - - -
3 Hb_002749_110 0.0646075107 - - PREDICTED: uncharacterized protein LOC105636001 isoform X1 [Jatropha curcas]
4 Hb_002835_230 0.0651733716 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
5 Hb_001195_560 0.0657606245 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
6 Hb_004785_100 0.0703733813 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000574_440 0.072317911 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
8 Hb_033720_010 0.072633736 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
9 Hb_006620_020 0.0726525645 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
10 Hb_001599_030 0.0727365072 - - PREDICTED: valine--tRNA ligase [Jatropha curcas]
11 Hb_017700_010 0.0730857327 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
12 Hb_000429_220 0.0739618115 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
13 Hb_131646_010 0.0740854604 - - protein arginine n-methyltransferase, putative [Ricinus communis]
14 Hb_000502_050 0.0746206028 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
15 Hb_001828_160 0.0746407228 - - hypothetical protein F775_31105 [Aegilops tauschii]
16 Hb_002686_250 0.0748628661 - - PREDICTED: U11/U12 small nuclear ribonucleoprotein 65 kDa protein isoform X1 [Jatropha curcas]
17 Hb_004055_150 0.0749536921 - - conserved hypothetical protein [Ricinus communis]
18 Hb_034432_030 0.0750869646 - - PREDICTED: probable glycosyltransferase At5g20260 isoform X1 [Jatropha curcas]
19 Hb_003126_100 0.0751852575 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
20 Hb_001047_220 0.0752974192 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]

Gene co-expression network

sample Hb_003018_130 Hb_003018_130 Hb_002823_030 Hb_002823_030 Hb_003018_130--Hb_002823_030 Hb_002749_110 Hb_002749_110 Hb_003018_130--Hb_002749_110 Hb_002835_230 Hb_002835_230 Hb_003018_130--Hb_002835_230 Hb_001195_560 Hb_001195_560 Hb_003018_130--Hb_001195_560 Hb_004785_100 Hb_004785_100 Hb_003018_130--Hb_004785_100 Hb_000574_440 Hb_000574_440 Hb_003018_130--Hb_000574_440 Hb_003680_150 Hb_003680_150 Hb_002823_030--Hb_003680_150 Hb_000190_120 Hb_000190_120 Hb_002823_030--Hb_000190_120 Hb_003371_110 Hb_003371_110 Hb_002823_030--Hb_003371_110 Hb_002823_030--Hb_002835_230 Hb_014361_070 Hb_014361_070 Hb_002823_030--Hb_014361_070 Hb_000152_260 Hb_000152_260 Hb_002749_110--Hb_000152_260 Hb_002093_030 Hb_002093_030 Hb_002749_110--Hb_002093_030 Hb_001473_090 Hb_001473_090 Hb_002749_110--Hb_001473_090 Hb_001599_030 Hb_001599_030 Hb_002749_110--Hb_001599_030 Hb_000107_400 Hb_000107_400 Hb_002749_110--Hb_000107_400 Hb_003126_100 Hb_003126_100 Hb_002749_110--Hb_003126_100 Hb_002835_230--Hb_004785_100 Hb_002078_110 Hb_002078_110 Hb_002835_230--Hb_002078_110 Hb_131646_010 Hb_131646_010 Hb_002835_230--Hb_131646_010 Hb_002686_250 Hb_002686_250 Hb_002835_230--Hb_002686_250 Hb_002835_230--Hb_014361_070 Hb_007426_150 Hb_007426_150 Hb_001195_560--Hb_007426_150 Hb_028308_010 Hb_028308_010 Hb_001195_560--Hb_028308_010 Hb_000617_100 Hb_000617_100 Hb_001195_560--Hb_000617_100 Hb_001195_560--Hb_014361_070 Hb_001195_560--Hb_002823_030 Hb_004785_100--Hb_131646_010 Hb_004785_100--Hb_002686_250 Hb_001821_160 Hb_001821_160 Hb_004785_100--Hb_001821_160 Hb_006960_050 Hb_006960_050 Hb_004785_100--Hb_006960_050 Hb_004785_100--Hb_002078_110 Hb_009503_030 Hb_009503_030 Hb_000574_440--Hb_009503_030 Hb_000084_250 Hb_000084_250 Hb_000574_440--Hb_000084_250 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_006831_110 Hb_006831_110 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.6735 23.3901 23.2421 22.06 47.6908 40.4521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.1022 21.8309 22.2838 19.1986 23.5431

CAGE analysis