Hb_003018_150

Information

Type -
Description -
Location Contig3018: 73828-74352
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11710g
description hypothetical protein
nr
ID XP_012065739.1
description PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LQC1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06522 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_150 0.0 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
2 Hb_000847_030 0.0707106213 - - PREDICTED: asparagine--tRNA ligase, cytoplasmic 2 [Jatropha curcas]
3 Hb_005914_160 0.084830344 - - PREDICTED: protein PROTON GRADIENT REGULATION 5, chloroplastic [Jatropha curcas]
4 Hb_001210_060 0.0856652834 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
5 Hb_003058_170 0.0860654958 - - PREDICTED: F-box protein At2g26850 isoform X1 [Jatropha curcas]
6 Hb_020141_030 0.1025731249 - - solanesyl diphosphate synthase, putative [Ricinus communis]
7 Hb_000618_110 0.1064823765 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
8 Hb_005694_120 0.10670986 - - PREDICTED: calcium-transporting ATPase, endoplasmic reticulum-type [Jatropha curcas]
9 Hb_001999_070 0.1075216761 - - PREDICTED: ammonium transporter 1 member 3 [Jatropha curcas]
10 Hb_002246_030 0.1115778532 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_001541_280 0.1134184613 - - phosphate transporter [Manihot esculenta]
12 Hb_000076_060 0.1168094102 - - hypothetical protein RCOM_0586940 [Ricinus communis]
13 Hb_004096_210 0.1184495002 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
14 Hb_022693_010 0.1200054971 - - pectin acetylesterase, putative [Ricinus communis]
15 Hb_003929_240 0.1214563224 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
16 Hb_022693_020 0.1218624868 - - pectin acetylesterase, putative [Ricinus communis]
17 Hb_001257_050 0.1256916822 - - PREDICTED: LOW QUALITY PROTEIN: protein YLS9 [Jatropha curcas]
18 Hb_000235_040 0.1264234859 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X1 [Populus euphratica]
19 Hb_001014_020 0.1267239533 - - gene GA family protein [Populus trichocarpa]
20 Hb_001946_120 0.1280180142 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_003018_150 Hb_003018_150 Hb_000847_030 Hb_000847_030 Hb_003018_150--Hb_000847_030 Hb_005914_160 Hb_005914_160 Hb_003018_150--Hb_005914_160 Hb_001210_060 Hb_001210_060 Hb_003018_150--Hb_001210_060 Hb_003058_170 Hb_003058_170 Hb_003018_150--Hb_003058_170 Hb_020141_030 Hb_020141_030 Hb_003018_150--Hb_020141_030 Hb_000618_110 Hb_000618_110 Hb_003018_150--Hb_000618_110 Hb_005694_120 Hb_005694_120 Hb_000847_030--Hb_005694_120 Hb_000847_030--Hb_000618_110 Hb_000984_160 Hb_000984_160 Hb_000847_030--Hb_000984_160 Hb_001946_120 Hb_001946_120 Hb_000847_030--Hb_001946_120 Hb_000847_030--Hb_001210_060 Hb_000708_020 Hb_000708_020 Hb_005914_160--Hb_000708_020 Hb_005914_160--Hb_005694_120 Hb_005914_160--Hb_000847_030 Hb_005914_160--Hb_001210_060 Hb_001047_210 Hb_001047_210 Hb_005914_160--Hb_001047_210 Hb_002246_030 Hb_002246_030 Hb_001210_060--Hb_002246_030 Hb_000329_440 Hb_000329_440 Hb_001210_060--Hb_000329_440 Hb_027472_060 Hb_027472_060 Hb_001210_060--Hb_027472_060 Hb_000103_130 Hb_000103_130 Hb_001210_060--Hb_000103_130 Hb_000076_060 Hb_000076_060 Hb_003058_170--Hb_000076_060 Hb_002713_060 Hb_002713_060 Hb_003058_170--Hb_002713_060 Hb_003058_170--Hb_001210_060 Hb_003058_170--Hb_000847_030 Hb_029223_010 Hb_029223_010 Hb_003058_170--Hb_029223_010 Hb_000208_270 Hb_000208_270 Hb_020141_030--Hb_000208_270 Hb_000787_210 Hb_000787_210 Hb_020141_030--Hb_000787_210 Hb_001541_280 Hb_001541_280 Hb_020141_030--Hb_001541_280 Hb_002814_010 Hb_002814_010 Hb_020141_030--Hb_002814_010 Hb_020141_030--Hb_003058_170 Hb_004096_210 Hb_004096_210 Hb_000618_110--Hb_004096_210 Hb_000140_460 Hb_000140_460 Hb_000618_110--Hb_000140_460 Hb_006970_030 Hb_006970_030 Hb_000618_110--Hb_006970_030 Hb_000866_020 Hb_000866_020 Hb_000618_110--Hb_000866_020 Hb_009393_130 Hb_009393_130 Hb_000618_110--Hb_009393_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.672411 12.137 37.4805 50.0831 0.531595 0.793639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.36424 3.80026 0.333337 4.96129 94.6118

CAGE analysis