Hb_003018_210

Information

Type -
Description -
Location Contig3018: 101021-102655
Sequence    

Annotation

kegg
ID rcu:RCOM_0870960
description hypothetical protein
nr
ID XP_011043193.1
description PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067LQD0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06537 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31774: 100958-102667
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003018_210 0.0 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
2 Hb_004174_030 0.0502589518 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
3 Hb_004097_030 0.0610772889 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
4 Hb_000035_190 0.0620495636 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001699_070 0.0646873541 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003398_050 0.0683201936 - - B-type cell cycle switch protein ccs52B [Populus trichocarpa]
7 Hb_001220_020 0.0712595494 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Jatropha curcas]
8 Hb_005914_100 0.07360636 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004032_390 0.074379417 - - CDK, putative [Ricinus communis]
10 Hb_005141_020 0.0756031586 - - laccase, putative [Ricinus communis]
11 Hb_002928_150 0.0826260841 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
12 Hb_003368_070 0.0870583382 - - PREDICTED: uncharacterized protein LOC105109387 [Populus euphratica]
13 Hb_162378_020 0.0871710816 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 13-like [Populus euphratica]
14 Hb_056196_020 0.0884424737 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
15 Hb_007245_030 0.0899328482 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000614_200 0.0913254415 - - plant mitotic spindle assembly checkpoint protein mad2, putative [Ricinus communis]
17 Hb_002837_120 0.0924551229 - - PREDICTED: legumin A-like [Jatropha curcas]
18 Hb_000084_230 0.0936255966 - - hypothetical protein POPTR_0016s08030g [Populus trichocarpa]
19 Hb_006788_130 0.0941769641 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
20 Hb_003776_050 0.0945155296 - - PREDICTED: uncharacterized protein LOC105641219 [Jatropha curcas]

Gene co-expression network

sample Hb_003018_210 Hb_003018_210 Hb_004174_030 Hb_004174_030 Hb_003018_210--Hb_004174_030 Hb_004097_030 Hb_004097_030 Hb_003018_210--Hb_004097_030 Hb_000035_190 Hb_000035_190 Hb_003018_210--Hb_000035_190 Hb_001699_070 Hb_001699_070 Hb_003018_210--Hb_001699_070 Hb_003398_050 Hb_003398_050 Hb_003018_210--Hb_003398_050 Hb_001220_020 Hb_001220_020 Hb_003018_210--Hb_001220_020 Hb_004174_030--Hb_004097_030 Hb_005914_100 Hb_005914_100 Hb_004174_030--Hb_005914_100 Hb_004174_030--Hb_001220_020 Hb_004174_030--Hb_003398_050 Hb_002928_150 Hb_002928_150 Hb_004174_030--Hb_002928_150 Hb_004097_030--Hb_005914_100 Hb_004097_030--Hb_002928_150 Hb_004097_030--Hb_003398_050 Hb_056196_020 Hb_056196_020 Hb_004097_030--Hb_056196_020 Hb_000035_190--Hb_001699_070 Hb_000035_190--Hb_003398_050 Hb_003368_070 Hb_003368_070 Hb_000035_190--Hb_003368_070 Hb_162378_020 Hb_162378_020 Hb_000035_190--Hb_162378_020 Hb_000035_190--Hb_001220_020 Hb_001699_070--Hb_003368_070 Hb_119044_040 Hb_119044_040 Hb_001699_070--Hb_119044_040 Hb_001699_070--Hb_003398_050 Hb_003776_050 Hb_003776_050 Hb_001699_070--Hb_003776_050 Hb_000614_200 Hb_000614_200 Hb_001699_070--Hb_000614_200 Hb_003398_050--Hb_002928_150 Hb_003398_050--Hb_001220_020 Hb_003398_050--Hb_003776_050 Hb_004032_390 Hb_004032_390 Hb_003398_050--Hb_004032_390 Hb_003398_050--Hb_005914_100 Hb_001220_020--Hb_004032_390 Hb_001220_020--Hb_162378_020 Hb_001220_020--Hb_002928_150 Hb_001235_040 Hb_001235_040 Hb_001220_020--Hb_001235_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0987859 0.90547 61.9694 21.4566 0.0165033 0.0289178
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0375733 0 0 2.72014 0.6752

CAGE analysis