Hb_003020_020

Information

Type -
Description -
Location Contig3020: 12402-15487
Sequence    

Annotation

kegg
ID rcu:RCOM_0734300
description chaperone protein DNAj, putative
nr
ID XP_012066970.1
description PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
swissprot
ID B0CAZ0
description Chaperone protein DnaJ OS=Acaryochloris marina (strain MBIC 11017) GN=dnaJ PE=3 SV=1
trembl
ID A0A067LCM1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02950 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31821: 12476-15087
cDNA
(Sanger)
(ID:Location)		 001_C02.ab1: 12476-14901 , 003_K22.ab1: 12476-14956 , 053_I04.ab1: 12476-14899

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_020 0.0 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
2 Hb_000768_170 0.0671362053 - - hypothetical protein JCGZ_02624 [Jatropha curcas]
3 Hb_111985_050 0.0830762988 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
4 Hb_112798_030 0.0873016931 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005186_050 0.0921971598 - - PREDICTED: uncharacterized protein LOC105628509 [Jatropha curcas]
6 Hb_000251_070 0.0955165333 - - hypothetical protein L484_010641 [Morus notabilis]
7 Hb_000347_540 0.097167618 - - protein binding protein, putative [Ricinus communis]
8 Hb_000787_050 0.0981329692 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]
9 Hb_001821_010 0.0991268586 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
10 Hb_001662_070 0.1003687048 - - PREDICTED: thiol-disulfide oxidoreductase LTO1 [Jatropha curcas]
11 Hb_007389_010 0.1005566291 - - PREDICTED: THO complex subunit 7A [Jatropha curcas]
12 Hb_004324_070 0.1008969581 - - protein phosphatase 2C [Hevea brasiliensis]
13 Hb_003683_120 0.101471273 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002963_020 0.1016989461 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009694_010 0.1020499533 - - conserved hypothetical protein [Ricinus communis]
16 Hb_017904_010 0.1031075249 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
17 Hb_000345_390 0.1036248272 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
18 Hb_003069_010 0.1041167951 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
19 Hb_003607_150 0.104473967 - - PREDICTED: thioredoxin-like protein 4B [Jatropha curcas]
20 Hb_012725_050 0.1047258222 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003020_020 Hb_003020_020 Hb_000768_170 Hb_000768_170 Hb_003020_020--Hb_000768_170 Hb_111985_050 Hb_111985_050 Hb_003020_020--Hb_111985_050 Hb_112798_030 Hb_112798_030 Hb_003020_020--Hb_112798_030 Hb_005186_050 Hb_005186_050 Hb_003020_020--Hb_005186_050 Hb_000251_070 Hb_000251_070 Hb_003020_020--Hb_000251_070 Hb_000347_540 Hb_000347_540 Hb_003020_020--Hb_000347_540 Hb_009694_010 Hb_009694_010 Hb_000768_170--Hb_009694_010 Hb_005054_060 Hb_005054_060 Hb_000768_170--Hb_005054_060 Hb_000768_170--Hb_000347_540 Hb_001481_170 Hb_001481_170 Hb_000768_170--Hb_001481_170 Hb_000690_160 Hb_000690_160 Hb_000768_170--Hb_000690_160 Hb_017904_010 Hb_017904_010 Hb_111985_050--Hb_017904_010 Hb_007389_010 Hb_007389_010 Hb_111985_050--Hb_007389_010 Hb_111985_050--Hb_009694_010 Hb_001959_070 Hb_001959_070 Hb_111985_050--Hb_001959_070 Hb_004837_030 Hb_004837_030 Hb_111985_050--Hb_004837_030 Hb_011571_010 Hb_011571_010 Hb_112798_030--Hb_011571_010 Hb_153112_020 Hb_153112_020 Hb_112798_030--Hb_153112_020 Hb_000331_080 Hb_000331_080 Hb_112798_030--Hb_000331_080 Hb_004931_090 Hb_004931_090 Hb_112798_030--Hb_004931_090 Hb_008878_030 Hb_008878_030 Hb_112798_030--Hb_008878_030 Hb_011224_110 Hb_011224_110 Hb_112798_030--Hb_011224_110 Hb_003069_010 Hb_003069_010 Hb_005186_050--Hb_003069_010 Hb_003607_150 Hb_003607_150 Hb_005186_050--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_005186_050--Hb_007154_020 Hb_000362_200 Hb_000362_200 Hb_005186_050--Hb_000362_200 Hb_001512_060 Hb_001512_060 Hb_005186_050--Hb_001512_060 Hb_005186_050--Hb_000251_070 Hb_004934_110 Hb_004934_110 Hb_000251_070--Hb_004934_110 Hb_001662_070 Hb_001662_070 Hb_000251_070--Hb_001662_070 Hb_145880_030 Hb_145880_030 Hb_000251_070--Hb_145880_030 Hb_000251_070--Hb_003607_150 Hb_000251_070--Hb_007154_020 Hb_001579_030 Hb_001579_030 Hb_000347_540--Hb_001579_030 Hb_000347_540--Hb_001662_070 Hb_000815_320 Hb_000815_320 Hb_000347_540--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_000347_540--Hb_000787_050 Hb_004324_070 Hb_004324_070 Hb_000347_540--Hb_004324_070 Hb_025645_010 Hb_025645_010 Hb_000347_540--Hb_025645_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.685 7.51126 19.1453 12.9396 24.3294 20.4664
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.9501 37.7481 25.6574 5.226 17.7951

CAGE analysis