Hb_003020_030

Information

Type -
Description -
Location Contig3020: 15793-20585
Sequence    

Annotation

kegg
ID rcu:RCOM_0734280
description sorting and assembly machinery (sam50) protein, putative
nr
ID XP_011004307.1
description PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
swissprot
ID Q9STE8
description Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1
trembl
ID B9S3G1
description Sorting and assembly machinery (Sam50) protein, putative OS=Ricinus communis GN=RCOM_0734280 PE=4 SV=1
Gene Ontology
ID GO:0005774
description protein toc75- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31823: 15795-20304 , PASA_asmbl_31824: 16368-16472 , PASA_asmbl_31825: 20601-21545
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_030 0.0 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
2 Hb_000025_270 0.0711018661 - - PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Jatropha curcas]
3 Hb_001008_120 0.0751024052 desease resistance Gene Name: PEX-1N peroxisome biogenesis factor, putative [Ricinus communis]
4 Hb_036790_080 0.0788593454 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
5 Hb_001936_090 0.0804817879 - - PREDICTED: BOI-related E3 ubiquitin-protein ligase 1-like isoform X1 [Jatropha curcas]
6 Hb_000033_110 0.0815786799 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
7 Hb_006483_110 0.0836230002 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
8 Hb_008387_020 0.0844762513 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
9 Hb_000815_170 0.0848853818 - - PREDICTED: uncharacterized protein PFB0145c [Jatropha curcas]
10 Hb_007426_110 0.0851757141 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
11 Hb_003544_140 0.0866691133 - - PREDICTED: protein GDAP2 homolog isoform X1 [Jatropha curcas]
12 Hb_005253_030 0.0867138518 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_000720_050 0.0868586739 - - PREDICTED: uncharacterized protein LOC105645857 isoform X1 [Jatropha curcas]
14 Hb_032920_050 0.0872803998 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
15 Hb_004003_040 0.0874853782 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
16 Hb_000174_170 0.0879869261 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
17 Hb_008959_010 0.0881124948 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000922_380 0.0881414745 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein MPP10 isoform X1 [Jatropha curcas]
19 Hb_000679_020 0.0885073539 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
20 Hb_029584_070 0.0886370414 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like [Jatropha curcas]

Gene co-expression network

sample Hb_003020_030 Hb_003020_030 Hb_000025_270 Hb_000025_270 Hb_003020_030--Hb_000025_270 Hb_001008_120 Hb_001008_120 Hb_003020_030--Hb_001008_120 Hb_036790_080 Hb_036790_080 Hb_003020_030--Hb_036790_080 Hb_001936_090 Hb_001936_090 Hb_003020_030--Hb_001936_090 Hb_000033_110 Hb_000033_110 Hb_003020_030--Hb_000033_110 Hb_006483_110 Hb_006483_110 Hb_003020_030--Hb_006483_110 Hb_007101_080 Hb_007101_080 Hb_000025_270--Hb_007101_080 Hb_004724_410 Hb_004724_410 Hb_000025_270--Hb_004724_410 Hb_001623_280 Hb_001623_280 Hb_000025_270--Hb_001623_280 Hb_000025_270--Hb_001936_090 Hb_004218_190 Hb_004218_190 Hb_000025_270--Hb_004218_190 Hb_028912_050 Hb_028912_050 Hb_001008_120--Hb_028912_050 Hb_005736_020 Hb_005736_020 Hb_001008_120--Hb_005736_020 Hb_002263_020 Hb_002263_020 Hb_001008_120--Hb_002263_020 Hb_001157_240 Hb_001157_240 Hb_001008_120--Hb_001157_240 Hb_000720_050 Hb_000720_050 Hb_001008_120--Hb_000720_050 Hb_005686_090 Hb_005686_090 Hb_001008_120--Hb_005686_090 Hb_005253_030 Hb_005253_030 Hb_036790_080--Hb_005253_030 Hb_032920_050 Hb_032920_050 Hb_036790_080--Hb_032920_050 Hb_000261_060 Hb_000261_060 Hb_036790_080--Hb_000261_060 Hb_000130_320 Hb_000130_320 Hb_036790_080--Hb_000130_320 Hb_001435_030 Hb_001435_030 Hb_036790_080--Hb_001435_030 Hb_029584_070 Hb_029584_070 Hb_001936_090--Hb_029584_070 Hb_001936_090--Hb_000720_050 Hb_002758_010 Hb_002758_010 Hb_001936_090--Hb_002758_010 Hb_001936_090--Hb_000130_320 Hb_188281_040 Hb_188281_040 Hb_001936_090--Hb_188281_040 Hb_001347_060 Hb_001347_060 Hb_001936_090--Hb_001347_060 Hb_013405_080 Hb_013405_080 Hb_000033_110--Hb_013405_080 Hb_009252_040 Hb_009252_040 Hb_000033_110--Hb_009252_040 Hb_000320_470 Hb_000320_470 Hb_000033_110--Hb_000320_470 Hb_004003_040 Hb_004003_040 Hb_000033_110--Hb_004003_040 Hb_026053_040 Hb_026053_040 Hb_000033_110--Hb_026053_040 Hb_000015_100 Hb_000015_100 Hb_000033_110--Hb_000015_100 Hb_007426_110 Hb_007426_110 Hb_006483_110--Hb_007426_110 Hb_028960_020 Hb_028960_020 Hb_006483_110--Hb_028960_020 Hb_015807_050 Hb_015807_050 Hb_006483_110--Hb_015807_050 Hb_041290_020 Hb_041290_020 Hb_006483_110--Hb_041290_020 Hb_006483_110--Hb_002263_020 Hb_109980_010 Hb_109980_010 Hb_006483_110--Hb_109980_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.497 12.0157 14.0017 11.9029 18.8559 19.3574
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.98901 13.0595 13.5434 18.2833 31.2753

CAGE analysis