Hb_003020_050

Information

Type -
Description -
Location Contig3020: 33705-35588
Sequence    

Annotation

kegg
ID rcu:RCOM_0734170
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002520529.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q3E6Q1
description Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
trembl
ID B9S3G0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0734170 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_050 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000264_320 0.0707024774 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760 [Jatropha curcas]
3 Hb_000140_230 0.0769431208 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
4 Hb_008775_040 0.0790358039 - - Pentatricopeptide repeat (PPR) superfamily protein, putative [Theobroma cacao]
5 Hb_073562_010 0.0847838511 - - hypothetical protein POPTR_0011s036602g, partial [Populus trichocarpa]
6 Hb_001956_200 0.0933476161 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
7 Hb_168697_010 0.0942421993 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
8 Hb_002701_040 0.101733363 - - PREDICTED: auxin transport protein BIG [Jatropha curcas]
9 Hb_002316_150 0.1033803953 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
10 Hb_001584_150 0.1054880493 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
11 Hb_031042_020 0.1055903928 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g47460 [Jatropha curcas]
12 Hb_008500_010 0.1088109887 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
13 Hb_000392_150 0.1095988009 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g74580 [Jatropha curcas]
14 Hb_000330_040 0.1109224502 - - PREDICTED: protein RER1B-like [Jatropha curcas]
15 Hb_000890_050 0.1135529646 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
16 Hb_001141_390 0.1174911813 - - PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
17 Hb_009486_200 0.1180944533 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
18 Hb_000175_220 0.1184096858 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
19 Hb_010874_020 0.1199412029 - - PREDICTED: uncharacterized protein LOC105636745 [Jatropha curcas]
20 Hb_000866_120 0.1206166064 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]

Gene co-expression network

sample Hb_003020_050 Hb_003020_050 Hb_000264_320 Hb_000264_320 Hb_003020_050--Hb_000264_320 Hb_000140_230 Hb_000140_230 Hb_003020_050--Hb_000140_230 Hb_008775_040 Hb_008775_040 Hb_003020_050--Hb_008775_040 Hb_073562_010 Hb_073562_010 Hb_003020_050--Hb_073562_010 Hb_001956_200 Hb_001956_200 Hb_003020_050--Hb_001956_200 Hb_168697_010 Hb_168697_010 Hb_003020_050--Hb_168697_010 Hb_000264_320--Hb_008775_040 Hb_002636_100 Hb_002636_100 Hb_000264_320--Hb_002636_100 Hb_000264_320--Hb_000140_230 Hb_000175_220 Hb_000175_220 Hb_000264_320--Hb_000175_220 Hb_015807_070 Hb_015807_070 Hb_000264_320--Hb_015807_070 Hb_002316_150 Hb_002316_150 Hb_000140_230--Hb_002316_150 Hb_000140_230--Hb_168697_010 Hb_000140_230--Hb_008775_040 Hb_048219_010 Hb_048219_010 Hb_000140_230--Hb_048219_010 Hb_008775_040--Hb_000175_220 Hb_008775_040--Hb_002636_100 Hb_000330_040 Hb_000330_040 Hb_008775_040--Hb_000330_040 Hb_073562_010--Hb_000330_040 Hb_002110_030 Hb_002110_030 Hb_073562_010--Hb_002110_030 Hb_073562_010--Hb_008775_040 Hb_001019_180 Hb_001019_180 Hb_073562_010--Hb_001019_180 Hb_002701_040 Hb_002701_040 Hb_073562_010--Hb_002701_040 Hb_004452_010 Hb_004452_010 Hb_001956_200--Hb_004452_010 Hb_001266_060 Hb_001266_060 Hb_001956_200--Hb_001266_060 Hb_008500_010 Hb_008500_010 Hb_001956_200--Hb_008500_010 Hb_001584_150 Hb_001584_150 Hb_001956_200--Hb_001584_150 Hb_000049_310 Hb_000049_310 Hb_001956_200--Hb_000049_310 Hb_031042_020 Hb_031042_020 Hb_001956_200--Hb_031042_020 Hb_000680_050 Hb_000680_050 Hb_168697_010--Hb_000680_050 Hb_010874_020 Hb_010874_020 Hb_168697_010--Hb_010874_020 Hb_168697_010--Hb_048219_010 Hb_009486_200 Hb_009486_200 Hb_168697_010--Hb_009486_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.78318 2.94032 0.719743 0.609963 2.04619 1.77701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.747728 1.30949 3.52098 1.93402 1.2811

CAGE analysis