Hb_003020_070

Information

Type -
Description -
Location Contig3020: 40779-56101
Sequence    

Annotation

kegg
ID mus:103997323
description uncharacterized protein LOC103997323
nr
ID XP_009416774.1
description PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
swissprot
ID Q9M345
description L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana GN=LECRK42 PE=2 SV=1
trembl
ID A0A0E0BAZ9
description Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1
Gene Ontology
ID GO:0005488
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31832: 46151-46501 , PASA_asmbl_31833: 51912-52050 , PASA_asmbl_31834: 53328-53520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_070 0.0 - - PREDICTED: uncharacterized protein LOC103997323 [Musa acuminata subsp. malaccensis]
2 Hb_002890_160 0.0933748925 - - PREDICTED: protein root UVB sensitive 6 isoform X1 [Jatropha curcas]
3 Hb_014068_010 0.1069950929 - - PREDICTED: phototropin-1 [Jatropha curcas]
4 Hb_000212_270 0.1143678603 - - calreticulin, putative [Ricinus communis]
5 Hb_003531_050 0.1218930387 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]
6 Hb_001352_030 0.1225233798 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
7 Hb_001898_100 0.1239221429 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 2-like [Jatropha curcas]
8 Hb_000175_200 0.125625655 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000345_400 0.1311564026 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001638_190 0.1312916167 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
11 Hb_003337_020 0.1324169177 - - PREDICTED: uncharacterized protein LOC105116455 [Populus euphratica]
12 Hb_007576_130 0.1326335755 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
13 Hb_005050_050 0.1345143853 - - PREDICTED: wall-associated receptor kinase 5-like [Glycine max]
14 Hb_000538_250 0.1347548377 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g07650 [Jatropha curcas]
15 Hb_007101_270 0.1353701464 - - PREDICTED: uncharacterized protein LOC105640496 [Jatropha curcas]
16 Hb_001227_140 0.13596064 - - PREDICTED: protein ROS1 [Jatropha curcas]
17 Hb_005486_020 0.1360576339 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
18 Hb_004102_080 0.1391170779 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
19 Hb_000265_170 0.1407609107 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
20 Hb_007120_130 0.1471279623 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003020_070 Hb_003020_070 Hb_002890_160 Hb_002890_160 Hb_003020_070--Hb_002890_160 Hb_014068_010 Hb_014068_010 Hb_003020_070--Hb_014068_010 Hb_000212_270 Hb_000212_270 Hb_003020_070--Hb_000212_270 Hb_003531_050 Hb_003531_050 Hb_003020_070--Hb_003531_050 Hb_001352_030 Hb_001352_030 Hb_003020_070--Hb_001352_030 Hb_001898_100 Hb_001898_100 Hb_003020_070--Hb_001898_100 Hb_002890_160--Hb_003531_050 Hb_002890_160--Hb_001352_030 Hb_010534_040 Hb_010534_040 Hb_002890_160--Hb_010534_040 Hb_000037_200 Hb_000037_200 Hb_002890_160--Hb_000037_200 Hb_000922_160 Hb_000922_160 Hb_002890_160--Hb_000922_160 Hb_014068_010--Hb_002890_160 Hb_014068_010--Hb_003531_050 Hb_000645_260 Hb_000645_260 Hb_014068_010--Hb_000645_260 Hb_000243_290 Hb_000243_290 Hb_014068_010--Hb_000243_290 Hb_014068_010--Hb_001352_030 Hb_008878_020 Hb_008878_020 Hb_000212_270--Hb_008878_020 Hb_000175_200 Hb_000175_200 Hb_000212_270--Hb_000175_200 Hb_000697_020 Hb_000697_020 Hb_000212_270--Hb_000697_020 Hb_000212_270--Hb_001898_100 Hb_001172_150 Hb_001172_150 Hb_000212_270--Hb_001172_150 Hb_003119_130 Hb_003119_130 Hb_000212_270--Hb_003119_130 Hb_003531_050--Hb_001352_030 Hb_001606_010 Hb_001606_010 Hb_003531_050--Hb_001606_010 Hb_001301_260 Hb_001301_260 Hb_003531_050--Hb_001301_260 Hb_000265_170 Hb_000265_170 Hb_003531_050--Hb_000265_170 Hb_000302_360 Hb_000302_360 Hb_003531_050--Hb_000302_360 Hb_001352_030--Hb_000265_170 Hb_001352_030--Hb_001606_010 Hb_001352_030--Hb_010534_040 Hb_005486_020 Hb_005486_020 Hb_001352_030--Hb_005486_020 Hb_001544_060 Hb_001544_060 Hb_001898_100--Hb_001544_060 Hb_003337_020 Hb_003337_020 Hb_001898_100--Hb_003337_020 Hb_006789_030 Hb_006789_030 Hb_001898_100--Hb_006789_030 Hb_001898_100--Hb_000175_200 Hb_001266_130 Hb_001266_130 Hb_001898_100--Hb_001266_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.163124 1.16045 4.21435 1.10593 0.0205304 0.00803334
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0682366 0.0859253 0.062157 0.554317 2.41681

CAGE analysis