Hb_003020_110

Information

Type -
Description -
Location Contig3020: 68716-75719
Sequence    

Annotation

kegg
ID tcc:TCM_041778
description Splicing factor PWI domain-containing protein, putative isoform 1
nr
ID XP_011035260.1
description PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
swissprot
ID Q5ZMJ9
description Serine/arginine repetitive matrix protein 1 OS=Gallus gallus GN=SRRM1 PE=2 SV=1
trembl
ID A0A061GXL7
description Splicing factor PWI domain-containing protein, putative isoform 2 OS=Theobroma cacao GN=TCM_041778 PE=4 SV=1
Gene Ontology
ID GO:0009987
description serine arginine repetitive matrix protein 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31839: 68735-75760 , PASA_asmbl_31840: 69946-75760 , PASA_asmbl_31841: 69946-75760 , PASA_asmbl_31842: 72455-74708 , PASA_asmbl_31843: 71412-71666
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_110 0.0 - - PREDICTED: serine/arginine repetitive matrix protein 1 isoform X2 [Populus euphratica]
2 Hb_000343_210 0.0631779964 - - ran-binding protein, putative [Ricinus communis]
3 Hb_164010_060 0.0650119119 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]
4 Hb_000342_110 0.0653301094 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
5 Hb_003581_120 0.0712223677 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
6 Hb_002400_180 0.0715563543 - - conserved hypothetical protein [Ricinus communis]
7 Hb_031042_070 0.0767400966 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000424_010 0.0773276113 - - PREDICTED: F-box/LRR-repeat protein 15 isoform X1 [Jatropha curcas]
9 Hb_000310_080 0.077352992 - - hypothetical protein EUTSA_v10023249mg [Eutrema salsugineum]
10 Hb_000224_060 0.0776264202 - - PREDICTED: transcription initiation factor TFIID subunit 6 [Jatropha curcas]
11 Hb_023020_060 0.0789251478 - - ubiquitin-conjugating enzyme e2S, putative [Ricinus communis]
12 Hb_007590_080 0.0794685772 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
13 Hb_000139_250 0.0796115967 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
14 Hb_004678_060 0.0799610934 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
15 Hb_000032_320 0.0799668526 - - protein binding protein, putative [Ricinus communis]
16 Hb_000406_240 0.0803516054 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
17 Hb_003656_160 0.0809044105 transcription factor TF Family: Alfin-like hypothetical protein B456_013G226400 [Gossypium raimondii]
18 Hb_027405_020 0.0822816706 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
19 Hb_004162_280 0.0824105008 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]
20 Hb_007520_030 0.0829652742 - - PREDICTED: peroxisomal membrane protein PEX14 [Jatropha curcas]

Gene co-expression network

sample Hb_003020_110 Hb_003020_110 Hb_000343_210 Hb_000343_210 Hb_003020_110--Hb_000343_210 Hb_164010_060 Hb_164010_060 Hb_003020_110--Hb_164010_060 Hb_000342_110 Hb_000342_110 Hb_003020_110--Hb_000342_110 Hb_003581_120 Hb_003581_120 Hb_003020_110--Hb_003581_120 Hb_002400_180 Hb_002400_180 Hb_003020_110--Hb_002400_180 Hb_031042_070 Hb_031042_070 Hb_003020_110--Hb_031042_070 Hb_147737_010 Hb_147737_010 Hb_000343_210--Hb_147737_010 Hb_002675_040 Hb_002675_040 Hb_000343_210--Hb_002675_040 Hb_000035_040 Hb_000035_040 Hb_000343_210--Hb_000035_040 Hb_000331_190 Hb_000331_190 Hb_000343_210--Hb_000331_190 Hb_000531_090 Hb_000531_090 Hb_000343_210--Hb_000531_090 Hb_004586_180 Hb_004586_180 Hb_164010_060--Hb_004586_180 Hb_006586_050 Hb_006586_050 Hb_164010_060--Hb_006586_050 Hb_007590_080 Hb_007590_080 Hb_164010_060--Hb_007590_080 Hb_007632_020 Hb_007632_020 Hb_164010_060--Hb_007632_020 Hb_063716_080 Hb_063716_080 Hb_164010_060--Hb_063716_080 Hb_002007_350 Hb_002007_350 Hb_000342_110--Hb_002007_350 Hb_005245_130 Hb_005245_130 Hb_000342_110--Hb_005245_130 Hb_001541_260 Hb_001541_260 Hb_000342_110--Hb_001541_260 Hb_011942_080 Hb_011942_080 Hb_000342_110--Hb_011942_080 Hb_000139_250 Hb_000139_250 Hb_000342_110--Hb_000139_250 Hb_003581_120--Hb_002400_180 Hb_008695_120 Hb_008695_120 Hb_003581_120--Hb_008695_120 Hb_002097_090 Hb_002097_090 Hb_003581_120--Hb_002097_090 Hb_000803_300 Hb_000803_300 Hb_003581_120--Hb_000803_300 Hb_001019_170 Hb_001019_170 Hb_003581_120--Hb_001019_170 Hb_000034_050 Hb_000034_050 Hb_003581_120--Hb_000034_050 Hb_000684_420 Hb_000684_420 Hb_002400_180--Hb_000684_420 Hb_004678_060 Hb_004678_060 Hb_002400_180--Hb_004678_060 Hb_002400_180--Hb_000803_300 Hb_002400_180--Hb_002097_090 Hb_002400_180--Hb_000034_050 Hb_001633_040 Hb_001633_040 Hb_031042_070--Hb_001633_040 Hb_033883_060 Hb_033883_060 Hb_031042_070--Hb_033883_060 Hb_007982_070 Hb_007982_070 Hb_031042_070--Hb_007982_070 Hb_000300_360 Hb_000300_360 Hb_031042_070--Hb_000300_360 Hb_002163_010 Hb_002163_010 Hb_031042_070--Hb_002163_010 Hb_031042_070--Hb_007632_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.5577 50.0741 21.7001 23.5318 78.9588 66.7433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.5305 32.2445 30.7081 34.7462 16.4846

CAGE analysis