Hb_003020_150

Information

Type -
Description -
Location Contig3020: 103575-113249
Sequence    

Annotation

kegg
ID rcu:RCOM_0732990
description tropinone reductase, putative (EC:1.1.1.206 1.1.1.184)
nr
ID XP_002520511.1
description tropinone reductase, putative [Ricinus communis]
swissprot
ID Q9ZW12
description Tropinone reductase homolog At2g29260, chloroplastic OS=Arabidopsis thaliana GN=At2g29260 PE=2 SV=1
trembl
ID B9S3E2
description Tropinone reductase, putative OS=Ricinus communis GN=RCOM_0732990 PE=3 SV=1
Gene Ontology
ID GO:0004090
description tropinone reductase homolog at5g06060

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31846: 104101-105189 , PASA_asmbl_31847: 105346-105813 , PASA_asmbl_31848: 110745-113218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_150 0.0 - - tropinone reductase, putative [Ricinus communis]
2 Hb_001979_020 0.0779332092 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
3 Hb_000163_050 0.0903955636 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
4 Hb_002232_060 0.0905734669 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
5 Hb_002016_080 0.0985923048 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
6 Hb_003880_030 0.0990292844 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
7 Hb_002260_010 0.1002204796 - - PREDICTED: coiled-coil-helix-coiled-coil-helix domain-containing protein 10, mitochondrial [Sesamum indicum]
8 Hb_003929_150 0.1037846018 - - PREDICTED: rRNA-processing protein fcf2-like [Jatropha curcas]
9 Hb_007037_020 0.1039918854 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 78 [Jatropha curcas]
10 Hb_006256_030 0.1042871704 - - PREDICTED: putative cyclic nucleotide-gated ion channel 18 [Jatropha curcas]
11 Hb_002631_180 0.1084763141 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
12 Hb_005054_260 0.1093191982 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
13 Hb_009075_010 0.1097187719 - - 60S ribosomal protein L10B [Hevea brasiliensis]
14 Hb_183612_060 0.1105186593 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
15 Hb_024074_010 0.1119978583 - - PREDICTED: cytochrome c [Jatropha curcas]
16 Hb_180074_010 0.1130344381 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
17 Hb_000424_200 0.1136804767 - - hypothetical protein JCGZ_07583 [Jatropha curcas]
18 Hb_013405_140 0.1145724201 - - PREDICTED: uncharacterized protein LOC105648437 [Jatropha curcas]
19 Hb_006355_040 0.1174387199 - - PREDICTED: chaperonin CPN60-2, mitochondrial-like [Jatropha curcas]
20 Hb_000465_070 0.1179668207 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_003020_150 Hb_003020_150 Hb_001979_020 Hb_001979_020 Hb_003020_150--Hb_001979_020 Hb_000163_050 Hb_000163_050 Hb_003020_150--Hb_000163_050 Hb_002232_060 Hb_002232_060 Hb_003020_150--Hb_002232_060 Hb_002016_080 Hb_002016_080 Hb_003020_150--Hb_002016_080 Hb_003880_030 Hb_003880_030 Hb_003020_150--Hb_003880_030 Hb_002260_010 Hb_002260_010 Hb_003020_150--Hb_002260_010 Hb_001979_020--Hb_002232_060 Hb_005054_260 Hb_005054_260 Hb_001979_020--Hb_005054_260 Hb_001979_020--Hb_003880_030 Hb_000072_200 Hb_000072_200 Hb_001979_020--Hb_000072_200 Hb_000384_120 Hb_000384_120 Hb_001979_020--Hb_000384_120 Hb_009075_010 Hb_009075_010 Hb_000163_050--Hb_009075_010 Hb_000085_350 Hb_000085_350 Hb_000163_050--Hb_000085_350 Hb_000538_120 Hb_000538_120 Hb_000163_050--Hb_000538_120 Hb_000739_140 Hb_000739_140 Hb_000163_050--Hb_000739_140 Hb_000413_280 Hb_000413_280 Hb_000163_050--Hb_000413_280 Hb_005843_140 Hb_005843_140 Hb_002232_060--Hb_005843_140 Hb_002232_060--Hb_000072_200 Hb_000465_070 Hb_000465_070 Hb_002232_060--Hb_000465_070 Hb_006198_070 Hb_006198_070 Hb_002232_060--Hb_006198_070 Hb_013405_140 Hb_013405_140 Hb_002016_080--Hb_013405_140 Hb_011485_020 Hb_011485_020 Hb_002016_080--Hb_011485_020 Hb_000922_040 Hb_000922_040 Hb_002016_080--Hb_000922_040 Hb_000673_020 Hb_000673_020 Hb_002016_080--Hb_000673_020 Hb_002016_080--Hb_000413_280 Hb_003783_030 Hb_003783_030 Hb_002016_080--Hb_003783_030 Hb_003880_030--Hb_000673_020 Hb_003880_030--Hb_000384_120 Hb_072922_020 Hb_072922_020 Hb_003880_030--Hb_072922_020 Hb_001329_150 Hb_001329_150 Hb_003880_030--Hb_001329_150 Hb_003880_030--Hb_000922_040 Hb_024074_010 Hb_024074_010 Hb_002260_010--Hb_024074_010 Hb_006256_030 Hb_006256_030 Hb_002260_010--Hb_006256_030 Hb_001252_220 Hb_001252_220 Hb_002260_010--Hb_001252_220 Hb_000731_190 Hb_000731_190 Hb_002260_010--Hb_000731_190 Hb_001493_050 Hb_001493_050 Hb_002260_010--Hb_001493_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.25028 6.66912 10.011 7.79402 2.13707 3.42329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8762 30.0473 13.0183 11.9077 9.49846

CAGE analysis