Hb_003020_220

Information

Type -
Description -
Location Contig3020: 134716-141708
Sequence    

Annotation

kegg
ID pop:POPTR_0009s04240g
description POPTRDRAFT_558016; chlororespiratory reduction 2 family protein
nr
ID XP_012064759.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
swissprot
ID Q9STF3
description Pentatricopeptide repeat-containing protein At3g46790, chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
trembl
ID A0A067LIE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05476 PE=4 SV=1
Gene Ontology
ID GO:0009507
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31855: 138617-138737 , PASA_asmbl_31858: 141018-141538 , PASA_asmbl_31859: 142228-147014 , PASA_asmbl_31860: 142231-143910
cDNA
(Sanger)
(ID:Location)		 011_A05.ab1: 138617-138737 , 036_P17.ab1: 142299-147012

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_220 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
2 Hb_000352_270 0.0682317572 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26630, chloroplastic-like [Jatropha curcas]
3 Hb_079312_010 0.0845162029 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002988_040 0.0853217551 - - -
5 Hb_082609_010 0.0853705087 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
6 Hb_005237_050 0.0854907034 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]
7 Hb_000510_290 0.0914436424 - - PREDICTED: protein OSB2, chloroplastic-like isoform X2 [Jatropha curcas]
8 Hb_070256_010 0.0921020945 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
9 Hb_027654_060 0.0942272791 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
10 Hb_003688_150 0.0946072206 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
11 Hb_013607_040 0.0946096152 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18520-like [Jatropha curcas]
12 Hb_005188_020 0.095024087 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02330 [Jatropha curcas]
13 Hb_103118_010 0.0972223088 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
14 Hb_000783_020 0.0978702507 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
15 Hb_009803_050 0.0983049268 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
16 Hb_000614_220 0.0984779148 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
17 Hb_001049_110 0.0997702988 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
18 Hb_000230_500 0.1011251722 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
19 Hb_001318_270 0.103031656 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
20 Hb_015941_020 0.1034995794 - - -

Gene co-expression network

sample Hb_003020_220 Hb_003020_220 Hb_000352_270 Hb_000352_270 Hb_003020_220--Hb_000352_270 Hb_079312_010 Hb_079312_010 Hb_003020_220--Hb_079312_010 Hb_002988_040 Hb_002988_040 Hb_003020_220--Hb_002988_040 Hb_082609_010 Hb_082609_010 Hb_003020_220--Hb_082609_010 Hb_005237_050 Hb_005237_050 Hb_003020_220--Hb_005237_050 Hb_000510_290 Hb_000510_290 Hb_003020_220--Hb_000510_290 Hb_000352_270--Hb_082609_010 Hb_007317_200 Hb_007317_200 Hb_000352_270--Hb_007317_200 Hb_002725_120 Hb_002725_120 Hb_000352_270--Hb_002725_120 Hb_000614_220 Hb_000614_220 Hb_000352_270--Hb_000614_220 Hb_001318_270 Hb_001318_270 Hb_000352_270--Hb_001318_270 Hb_009803_050 Hb_009803_050 Hb_079312_010--Hb_009803_050 Hb_012423_030 Hb_012423_030 Hb_079312_010--Hb_012423_030 Hb_003688_150 Hb_003688_150 Hb_079312_010--Hb_003688_150 Hb_003768_030 Hb_003768_030 Hb_079312_010--Hb_003768_030 Hb_000603_080 Hb_000603_080 Hb_079312_010--Hb_000603_080 Hb_000230_500 Hb_000230_500 Hb_002988_040--Hb_000230_500 Hb_000913_020 Hb_000913_020 Hb_002988_040--Hb_000913_020 Hb_000497_300 Hb_000497_300 Hb_002988_040--Hb_000497_300 Hb_000041_100 Hb_000041_100 Hb_002988_040--Hb_000041_100 Hb_005686_090 Hb_005686_090 Hb_002988_040--Hb_005686_090 Hb_027654_060 Hb_027654_060 Hb_082609_010--Hb_027654_060 Hb_082609_010--Hb_000614_220 Hb_001898_160 Hb_001898_160 Hb_082609_010--Hb_001898_160 Hb_103118_010 Hb_103118_010 Hb_082609_010--Hb_103118_010 Hb_006420_050 Hb_006420_050 Hb_005237_050--Hb_006420_050 Hb_001049_110 Hb_001049_110 Hb_005237_050--Hb_001049_110 Hb_005116_050 Hb_005116_050 Hb_005237_050--Hb_005116_050 Hb_005237_050--Hb_082609_010 Hb_018133_090 Hb_018133_090 Hb_005237_050--Hb_018133_090 Hb_000510_290--Hb_000614_220 Hb_000130_220 Hb_000130_220 Hb_000510_290--Hb_000130_220 Hb_001322_110 Hb_001322_110 Hb_000510_290--Hb_001322_110 Hb_003038_240 Hb_003038_240 Hb_000510_290--Hb_003038_240 Hb_011689_120 Hb_011689_120 Hb_000510_290--Hb_011689_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09123 2.0881 1.58472 1.3113 1.6661 2.13864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.59951 4.19961 4.76468 2.09978 4.55497

CAGE analysis