Hb_003020_230

Information

Type -
Description -
Location Contig3020: 142344-147035
Sequence    

Annotation

kegg
ID cam:101489651
description DNA-directed RNA polymerase II subunit RPB7-like
nr
ID NP_001236982.1
description DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
swissprot
ID P46279
description DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1
trembl
ID C6SWZ3
description Putative uncharacterized protein OS=Glycine max PE=2 SV=1
Gene Ontology
ID GO:0005665
description dna-directed rna polymerase ii non-catalytic subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31859: 142228-147014 , PASA_asmbl_31860: 142231-143910 , PASA_asmbl_31861: 144191-144945
cDNA
(Sanger)
(ID:Location)		 036_P17.ab1: 142299-147012

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_230 0.0 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
2 Hb_005997_010 0.0536654709 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
3 Hb_009954_040 0.055531771 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
4 Hb_000371_080 0.0608136139 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
5 Hb_000613_140 0.0623823227 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
6 Hb_000170_010 0.06753346 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_001824_070 0.0713754579 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
8 Hb_001691_210 0.071778278 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
9 Hb_004837_140 0.0722348791 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
10 Hb_021650_030 0.0728226486 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
11 Hb_002097_110 0.0740211732 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_002963_010 0.0740392542 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
13 Hb_002685_190 0.0773075976 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
14 Hb_000061_320 0.0792485055 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]
15 Hb_005398_030 0.0803902076 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
16 Hb_032717_080 0.0814820084 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
17 Hb_011828_020 0.082146871 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
18 Hb_000444_050 0.0821810409 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
19 Hb_000834_270 0.0823803045 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
20 Hb_009711_030 0.0823922073 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003020_230 Hb_003020_230 Hb_005997_010 Hb_005997_010 Hb_003020_230--Hb_005997_010 Hb_009954_040 Hb_009954_040 Hb_003020_230--Hb_009954_040 Hb_000371_080 Hb_000371_080 Hb_003020_230--Hb_000371_080 Hb_000613_140 Hb_000613_140 Hb_003020_230--Hb_000613_140 Hb_000170_010 Hb_000170_010 Hb_003020_230--Hb_000170_010 Hb_001824_070 Hb_001824_070 Hb_003020_230--Hb_001824_070 Hb_004837_140 Hb_004837_140 Hb_005997_010--Hb_004837_140 Hb_005997_010--Hb_009954_040 Hb_000087_020 Hb_000087_020 Hb_005997_010--Hb_000087_020 Hb_005997_010--Hb_001824_070 Hb_005997_010--Hb_000371_080 Hb_000300_610 Hb_000300_610 Hb_009954_040--Hb_000300_610 Hb_002685_190 Hb_002685_190 Hb_009954_040--Hb_002685_190 Hb_000061_320 Hb_000061_320 Hb_009954_040--Hb_000061_320 Hb_000103_090 Hb_000103_090 Hb_009954_040--Hb_000103_090 Hb_005686_110 Hb_005686_110 Hb_000371_080--Hb_005686_110 Hb_009711_030 Hb_009711_030 Hb_000371_080--Hb_009711_030 Hb_022250_040 Hb_022250_040 Hb_000371_080--Hb_022250_040 Hb_000371_080--Hb_001824_070 Hb_000720_120 Hb_000720_120 Hb_000613_140--Hb_000720_120 Hb_004223_280 Hb_004223_280 Hb_000613_140--Hb_004223_280 Hb_000926_250 Hb_000926_250 Hb_000613_140--Hb_000926_250 Hb_003615_010 Hb_003615_010 Hb_000613_140--Hb_003615_010 Hb_000510_130 Hb_000510_130 Hb_000613_140--Hb_000510_130 Hb_000170_010--Hb_004837_140 Hb_002963_010 Hb_002963_010 Hb_000170_010--Hb_002963_010 Hb_005432_030 Hb_005432_030 Hb_000170_010--Hb_005432_030 Hb_000625_070 Hb_000625_070 Hb_000170_010--Hb_000625_070 Hb_012338_010 Hb_012338_010 Hb_000170_010--Hb_012338_010 Hb_002918_200 Hb_002918_200 Hb_000170_010--Hb_002918_200 Hb_001477_110 Hb_001477_110 Hb_001824_070--Hb_001477_110 Hb_001824_070--Hb_009711_030 Hb_001584_070 Hb_001584_070 Hb_001824_070--Hb_001584_070 Hb_003878_190 Hb_003878_190 Hb_001824_070--Hb_003878_190 Hb_000465_060 Hb_000465_060 Hb_001824_070--Hb_000465_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
184.972 62.7274 40.3672 66.3271 155.884 225.276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
321.302 293.882 203.032 144.256 61.8445

CAGE analysis