Hb_003020_290

Information

Type -
Description -
Location Contig3020: 181699-185342
Sequence    

Annotation

kegg
ID cic:CICLE_v10029104mg
description hypothetical protein
nr
ID XP_006424944.1
description hypothetical protein CICLE_v10029104mg [Citrus clementina]
swissprot
ID Q9STF9
description Pentatricopeptide repeat-containing protein At3g46870 OS=Arabidopsis thaliana GN=At3g46870 PE=1 SV=1
trembl
ID V4UFU7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029104mg PE=4 SV=1
Gene Ontology
ID GO:0009507
description pentatricopeptide repeat-containing protein at3g46870

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_290 0.0 - - hypothetical protein CICLE_v10029104mg [Citrus clementina]
2 Hb_158235_010 0.2114626689 - - PREDICTED: uncharacterized protein LOC104800023, partial [Tarenaya hassleriana]
3 Hb_005496_100 0.2165213489 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
4 Hb_001519_020 0.2208875632 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
5 Hb_001344_030 0.2373380367 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000757_090 0.2557698768 - - SPla/RYanodine receptor domain-containing protein isoform 3 [Theobroma cacao]
7 Hb_186054_010 0.2645673598 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_000816_220 0.266001948 - - PREDICTED: CBL-interacting protein kinase 18-like [Jatropha curcas]
9 Hb_161207_010 0.2717368328 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
10 Hb_156924_020 0.2736212316 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
11 Hb_001818_110 0.2795743998 - - -
12 Hb_000445_200 0.281163728 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
13 Hb_012938_010 0.2818254324 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_006212_030 0.2825950959 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
15 Hb_000387_090 0.2885538004 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
16 Hb_000375_180 0.2953589837 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
17 Hb_145157_010 0.2982925138 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
18 Hb_013253_030 0.3034664833 - - PREDICTED: protein argonaute 16 isoform X1 [Jatropha curcas]
19 Hb_000043_100 0.3040450769 - - PREDICTED: uncharacterized protein LOC105797583 [Gossypium raimondii]
20 Hb_007479_030 0.3078447882 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]

Gene co-expression network

sample Hb_003020_290 Hb_003020_290 Hb_158235_010 Hb_158235_010 Hb_003020_290--Hb_158235_010 Hb_005496_100 Hb_005496_100 Hb_003020_290--Hb_005496_100 Hb_001519_020 Hb_001519_020 Hb_003020_290--Hb_001519_020 Hb_001344_030 Hb_001344_030 Hb_003020_290--Hb_001344_030 Hb_000757_090 Hb_000757_090 Hb_003020_290--Hb_000757_090 Hb_186054_010 Hb_186054_010 Hb_003020_290--Hb_186054_010 Hb_158235_010--Hb_001519_020 Hb_158235_010--Hb_001344_030 Hb_013253_030 Hb_013253_030 Hb_158235_010--Hb_013253_030 Hb_000043_100 Hb_000043_100 Hb_158235_010--Hb_000043_100 Hb_158235_010--Hb_005496_100 Hb_005496_100--Hb_001519_020 Hb_008191_010 Hb_008191_010 Hb_005496_100--Hb_008191_010 Hb_161207_010 Hb_161207_010 Hb_005496_100--Hb_161207_010 Hb_012218_020 Hb_012218_020 Hb_005496_100--Hb_012218_020 Hb_007157_010 Hb_007157_010 Hb_001519_020--Hb_007157_010 Hb_001519_020--Hb_000757_090 Hb_001519_020--Hb_001344_030 Hb_001344_030--Hb_000757_090 Hb_001344_030--Hb_186054_010 Hb_156924_020 Hb_156924_020 Hb_001344_030--Hb_156924_020 Hb_104721_010 Hb_104721_010 Hb_001344_030--Hb_104721_010 Hb_094852_010 Hb_094852_010 Hb_001344_030--Hb_094852_010 Hb_000757_090--Hb_156924_020 Hb_000757_090--Hb_094852_010 Hb_000757_090--Hb_186054_010 Hb_178654_020 Hb_178654_020 Hb_000757_090--Hb_178654_020 Hb_012938_010 Hb_012938_010 Hb_000757_090--Hb_012938_010 Hb_186054_010--Hb_104721_010 Hb_186054_010--Hb_156924_020 Hb_186054_010--Hb_158235_010 Hb_186054_010--Hb_094852_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.070173 0 0 0.121268 0.0553258 0.0984157
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.513241 0.604846 0 0 1.89591

CAGE analysis