Hb_003020_300

Information

Type -
Description -
Location Contig3020: 185996-188196
Sequence    

Annotation

kegg
ID rcu:RCOM_0732000
description hypothetical protein
nr
ID XP_002520485.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3B6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0732000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31873: 186492-187936
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_300 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000320_360 0.155494677 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
3 Hb_006940_020 0.1555591 - - polyprotein [Oryza australiensis]
4 Hb_000992_020 0.1634798928 - - monoxygenase, putative [Ricinus communis]
5 Hb_007534_030 0.164289206 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
6 Hb_000175_270 0.1643955396 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
7 Hb_002110_110 0.1688896119 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]
8 Hb_012539_040 0.1721452868 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
9 Hb_000997_140 0.1751246402 - - PREDICTED: chloroplastic group IIA intron splicing facilitator CRS1, chloroplastic [Jatropha curcas]
10 Hb_000906_070 0.1766634609 - - PREDICTED: protein SCAR2-like isoform X1 [Jatropha curcas]
11 Hb_005542_010 0.1832801644 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
12 Hb_140389_010 0.1850563492 - - Ran GTPase binding protein, putative [Ricinus communis]
13 Hb_007576_180 0.1852465166 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
14 Hb_000359_220 0.1855734243 - - PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Jatropha curcas]
15 Hb_001073_030 0.1864284027 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
16 Hb_015778_060 0.1871290353 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
17 Hb_002395_020 0.1880955582 - - Protein CREG1 precursor, putative [Ricinus communis]
18 Hb_002942_130 0.18832219 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
19 Hb_001476_090 0.1886174289 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
20 Hb_001405_230 0.1897633323 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_003020_300 Hb_003020_300 Hb_000320_360 Hb_000320_360 Hb_003020_300--Hb_000320_360 Hb_006940_020 Hb_006940_020 Hb_003020_300--Hb_006940_020 Hb_000992_020 Hb_000992_020 Hb_003020_300--Hb_000992_020 Hb_007534_030 Hb_007534_030 Hb_003020_300--Hb_007534_030 Hb_000175_270 Hb_000175_270 Hb_003020_300--Hb_000175_270 Hb_002110_110 Hb_002110_110 Hb_003020_300--Hb_002110_110 Hb_013399_090 Hb_013399_090 Hb_000320_360--Hb_013399_090 Hb_000359_220 Hb_000359_220 Hb_000320_360--Hb_000359_220 Hb_015778_060 Hb_015778_060 Hb_000320_360--Hb_015778_060 Hb_001408_120 Hb_001408_120 Hb_000320_360--Hb_001408_120 Hb_002942_130 Hb_002942_130 Hb_000320_360--Hb_002942_130 Hb_000008_410 Hb_000008_410 Hb_000320_360--Hb_000008_410 Hb_001221_360 Hb_001221_360 Hb_006940_020--Hb_001221_360 Hb_010565_030 Hb_010565_030 Hb_006940_020--Hb_010565_030 Hb_003687_160 Hb_003687_160 Hb_006940_020--Hb_003687_160 Hb_000173_110 Hb_000173_110 Hb_006940_020--Hb_000173_110 Hb_004242_120 Hb_004242_120 Hb_006940_020--Hb_004242_120 Hb_000906_070 Hb_000906_070 Hb_000992_020--Hb_000906_070 Hb_001087_010 Hb_001087_010 Hb_000992_020--Hb_001087_010 Hb_001213_040 Hb_001213_040 Hb_000992_020--Hb_001213_040 Hb_000251_050 Hb_000251_050 Hb_000992_020--Hb_000251_050 Hb_000069_500 Hb_000069_500 Hb_000992_020--Hb_000069_500 Hb_012539_040 Hb_012539_040 Hb_007534_030--Hb_012539_040 Hb_007534_030--Hb_000175_270 Hb_140389_010 Hb_140389_010 Hb_007534_030--Hb_140389_010 Hb_002768_080 Hb_002768_080 Hb_007534_030--Hb_002768_080 Hb_161549_010 Hb_161549_010 Hb_007534_030--Hb_161549_010 Hb_187005_010 Hb_187005_010 Hb_000175_270--Hb_187005_010 Hb_001499_070 Hb_001499_070 Hb_000175_270--Hb_001499_070 Hb_000221_180 Hb_000221_180 Hb_000175_270--Hb_000221_180 Hb_014006_010 Hb_014006_010 Hb_000175_270--Hb_014006_010 Hb_019863_060 Hb_019863_060 Hb_000175_270--Hb_019863_060 Hb_000340_360 Hb_000340_360 Hb_000175_270--Hb_000340_360 Hb_000032_020 Hb_000032_020 Hb_002110_110--Hb_000032_020 Hb_005542_010 Hb_005542_010 Hb_002110_110--Hb_005542_010 Hb_000879_030 Hb_000879_030 Hb_002110_110--Hb_000879_030 Hb_001405_230 Hb_001405_230 Hb_002110_110--Hb_001405_230 Hb_002110_110--Hb_010565_030 Hb_011472_050 Hb_011472_050 Hb_002110_110--Hb_011472_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.529716 4.96338 3.21213 1.17716 1.23442 1.35517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.693066 0.19468 0 2.25373 8.37477

CAGE analysis