Hb_003020_310

Information

Type -
Description -
Location Contig3020: 190247-193083
Sequence    

Annotation

kegg
ID rcu:RCOM_0731990
description glycosyltransferase, putative
nr
ID XP_002520484.1
description glycosyltransferase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S3B5
description Glycosyltransferase, putative OS=Ricinus communis GN=RCOM_0731990 PE=4 SV=1
Gene Ontology
ID GO:0006661
description maternal effect embryo arrest 60

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_310 0.0 - - glycosyltransferase, putative [Ricinus communis]
2 Hb_007120_070 0.0966550919 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]
3 Hb_078633_010 0.1221222432 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
4 Hb_000077_410 0.1224256279 - - protein with unknown function [Ricinus communis]
5 Hb_023214_010 0.1233608736 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
6 Hb_148121_010 0.1245836508 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001035_040 0.1246663643 - - unnamed protein product [Coffea canephora]
8 Hb_001268_080 0.1252611029 - - catalytic, putative [Ricinus communis]
9 Hb_054865_130 0.1256194361 - - acyltransferase, putative [Ricinus communis]
10 Hb_000062_580 0.127241639 - - ATP binding protein, putative [Ricinus communis]
11 Hb_000107_070 0.1275767124 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]
12 Hb_149683_010 0.1315628926 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
13 Hb_000178_110 0.139086075 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003038_180 0.13963913 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
15 Hb_025964_030 0.1408609873 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g55760 [Jatropha curcas]
16 Hb_011004_010 0.1434567369 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
17 Hb_000836_500 0.143590688 - - Late embryogenesis abundant protein Lea14-A, putative [Ricinus communis]
18 Hb_002291_030 0.1485884066 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
19 Hb_000742_270 0.14895356 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
20 Hb_000032_040 0.1490676522 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]

Gene co-expression network

sample Hb_003020_310 Hb_003020_310 Hb_007120_070 Hb_007120_070 Hb_003020_310--Hb_007120_070 Hb_078633_010 Hb_078633_010 Hb_003020_310--Hb_078633_010 Hb_000077_410 Hb_000077_410 Hb_003020_310--Hb_000077_410 Hb_023214_010 Hb_023214_010 Hb_003020_310--Hb_023214_010 Hb_148121_010 Hb_148121_010 Hb_003020_310--Hb_148121_010 Hb_001035_040 Hb_001035_040 Hb_003020_310--Hb_001035_040 Hb_029584_140 Hb_029584_140 Hb_007120_070--Hb_029584_140 Hb_000178_110 Hb_000178_110 Hb_007120_070--Hb_000178_110 Hb_003038_180 Hb_003038_180 Hb_007120_070--Hb_003038_180 Hb_000062_580 Hb_000062_580 Hb_007120_070--Hb_000062_580 Hb_007120_070--Hb_001035_040 Hb_001268_080 Hb_001268_080 Hb_078633_010--Hb_001268_080 Hb_072912_020 Hb_072912_020 Hb_078633_010--Hb_072912_020 Hb_005137_020 Hb_005137_020 Hb_078633_010--Hb_005137_020 Hb_001213_120 Hb_001213_120 Hb_078633_010--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_078633_010--Hb_000367_280 Hb_000544_110 Hb_000544_110 Hb_078633_010--Hb_000544_110 Hb_000077_410--Hb_000178_110 Hb_012725_110 Hb_012725_110 Hb_000077_410--Hb_012725_110 Hb_002260_090 Hb_002260_090 Hb_000077_410--Hb_002260_090 Hb_000836_500 Hb_000836_500 Hb_000077_410--Hb_000836_500 Hb_002291_030 Hb_002291_030 Hb_000077_410--Hb_002291_030 Hb_005396_040 Hb_005396_040 Hb_023214_010--Hb_005396_040 Hb_000107_070 Hb_000107_070 Hb_023214_010--Hb_000107_070 Hb_124315_040 Hb_124315_040 Hb_023214_010--Hb_124315_040 Hb_023214_010--Hb_001035_040 Hb_023214_010--Hb_007120_070 Hb_000742_270 Hb_000742_270 Hb_148121_010--Hb_000742_270 Hb_001741_090 Hb_001741_090 Hb_148121_010--Hb_001741_090 Hb_001507_070 Hb_001507_070 Hb_148121_010--Hb_001507_070 Hb_148121_010--Hb_001035_040 Hb_148121_010--Hb_001268_080 Hb_000032_040 Hb_000032_040 Hb_148121_010--Hb_000032_040 Hb_000920_150 Hb_000920_150 Hb_001035_040--Hb_000920_150 Hb_001035_040--Hb_000107_070 Hb_004738_010 Hb_004738_010 Hb_001035_040--Hb_004738_010 Hb_001035_040--Hb_001741_090 Hb_001035_040--Hb_003038_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5589 0.525863 0.592499 2.69701 2.81318 4.47825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.9046 20.2755 16.7577 0.88202 1.00022

CAGE analysis