Hb_003020_330

Information

Type -
Description -
Location Contig3020: 211296-214739
Sequence    

Annotation

kegg
ID cic:CICLE_v10026377mg
description hypothetical protein
nr
ID KJB67070.1
description hypothetical protein B456_010G173100 [Gossypium raimondii]
swissprot
ID Q9M4T8
description Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1
trembl
ID A0A0D2VBM9
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G173100 PE=4 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit alpha type-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_330 0.0 - - hypothetical protein B456_010G173100 [Gossypium raimondii]
2 Hb_002838_030 0.080983281 - - 40S ribosomal protein S25A [Hevea brasiliensis]
3 Hb_007313_080 0.0905650237 - - hypothetical protein CICLE_v10002804mg [Citrus clementina]
4 Hb_007120_090 0.0941617833 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
5 Hb_011377_020 0.0967670927 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
6 Hb_000110_170 0.09766405 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_027472_160 0.0983126404 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
8 Hb_006588_080 0.0992223808 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
9 Hb_001225_010 0.0996438601 - - unnamed protein product [Coffea canephora]
10 Hb_154141_030 0.0997317232 - - PREDICTED: histone H2AX [Populus euphratica]
11 Hb_000948_220 0.1009639637 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
12 Hb_000768_130 0.101099161 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
13 Hb_120823_010 0.1048151832 - - -
14 Hb_000997_120 0.1065030734 - - 40S ribosomal protein S15E [Hevea brasiliensis]
15 Hb_003540_200 0.1087778405 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
16 Hb_000087_130 0.110229467 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Jatropha curcas]
17 Hb_009778_040 0.1110182013 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
18 Hb_000454_180 0.1110298278 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
19 Hb_007441_260 0.1114887181 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
20 Hb_000915_120 0.1118470692 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]

Gene co-expression network

sample Hb_003020_330 Hb_003020_330 Hb_002838_030 Hb_002838_030 Hb_003020_330--Hb_002838_030 Hb_007313_080 Hb_007313_080 Hb_003020_330--Hb_007313_080 Hb_007120_090 Hb_007120_090 Hb_003020_330--Hb_007120_090 Hb_011377_020 Hb_011377_020 Hb_003020_330--Hb_011377_020 Hb_000110_170 Hb_000110_170 Hb_003020_330--Hb_000110_170 Hb_027472_160 Hb_027472_160 Hb_003020_330--Hb_027472_160 Hb_000997_120 Hb_000997_120 Hb_002838_030--Hb_000997_120 Hb_002838_030--Hb_007120_090 Hb_000915_120 Hb_000915_120 Hb_002838_030--Hb_000915_120 Hb_000948_220 Hb_000948_220 Hb_002838_030--Hb_000948_220 Hb_000087_130 Hb_000087_130 Hb_002838_030--Hb_000087_130 Hb_000768_130 Hb_000768_130 Hb_007313_080--Hb_000768_130 Hb_000454_180 Hb_000454_180 Hb_007313_080--Hb_000454_180 Hb_002900_130 Hb_002900_130 Hb_007313_080--Hb_002900_130 Hb_154141_030 Hb_154141_030 Hb_007313_080--Hb_154141_030 Hb_007313_080--Hb_027472_160 Hb_007120_090--Hb_000997_120 Hb_001789_050 Hb_001789_050 Hb_007120_090--Hb_001789_050 Hb_007120_090--Hb_000948_220 Hb_000676_160 Hb_000676_160 Hb_007120_090--Hb_000676_160 Hb_012395_130 Hb_012395_130 Hb_007120_090--Hb_012395_130 Hb_000599_280 Hb_000599_280 Hb_011377_020--Hb_000599_280 Hb_011377_020--Hb_012395_130 Hb_004754_070 Hb_004754_070 Hb_011377_020--Hb_004754_070 Hb_006588_080 Hb_006588_080 Hb_011377_020--Hb_006588_080 Hb_001780_050 Hb_001780_050 Hb_011377_020--Hb_001780_050 Hb_004007_180 Hb_004007_180 Hb_011377_020--Hb_004007_180 Hb_000878_020 Hb_000878_020 Hb_000110_170--Hb_000878_020 Hb_000110_170--Hb_006588_080 Hb_003540_200 Hb_003540_200 Hb_000110_170--Hb_003540_200 Hb_120823_010 Hb_120823_010 Hb_000110_170--Hb_120823_010 Hb_001225_010 Hb_001225_010 Hb_000110_170--Hb_001225_010 Hb_002811_090 Hb_002811_090 Hb_027472_160--Hb_002811_090 Hb_000645_140 Hb_000645_140 Hb_027472_160--Hb_000645_140 Hb_027472_160--Hb_000915_120 Hb_027472_160--Hb_000948_220 Hb_027472_160--Hb_007120_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.9558 16.6259 63.2986 117.528 28.6538 43.1382
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
168.571 439.065 133.905 92.6289 52.4161

CAGE analysis