Hb_003020_340

Information

Type -
Description -
Location Contig3020: 217654-219552
Sequence    

Annotation

kegg
ID rcu:RCOM_0417930
description DNA binding protein, putative
nr
ID XP_012068797.1
description PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWP4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24630 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003020_340 0.0 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
2 Hb_000002_150 0.0547943183 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000925_120 0.0949557541 - - Spotted leaf protein, putative [Ricinus communis]
4 Hb_055154_010 0.1050683204 - - PREDICTED: laccase-7 [Jatropha curcas]
5 Hb_000147_010 0.1133045567 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
6 Hb_005356_030 0.1228313192 - - protein binding protein, putative [Ricinus communis]
7 Hb_003480_010 0.1266478628 - - cytochrome P450 family protein [Populus trichocarpa]
8 Hb_160814_010 0.1275474802 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
9 Hb_135673_010 0.1311315287 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
10 Hb_103452_010 0.1319820565 - - hypothetical protein VITISV_027174 [Vitis vinifera]
11 Hb_178252_010 0.1375644191 - - hypothetical protein POPTR_0018s01890g [Populus trichocarpa]
12 Hb_000161_230 0.1463301993 - - lactoylglutathione lyase, putative [Ricinus communis]
13 Hb_001006_050 0.1485040849 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
14 Hb_000364_130 0.1556611736 - - unnamed protein product [Vitis vinifera]
15 Hb_002559_010 0.1559185128 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
16 Hb_116783_010 0.1565852207 - - hypothetical protein POPTR_0011s16190g [Populus trichocarpa]
17 Hb_001633_120 0.1573589783 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
18 Hb_007113_030 0.1617159 - - -
19 Hb_004116_090 0.1635947995 - - -
20 Hb_000187_110 0.1664369551 - - PREDICTED: serine carboxypeptidase-like 7 [Jatropha curcas]

Gene co-expression network

sample Hb_003020_340 Hb_003020_340 Hb_000002_150 Hb_000002_150 Hb_003020_340--Hb_000002_150 Hb_000925_120 Hb_000925_120 Hb_003020_340--Hb_000925_120 Hb_055154_010 Hb_055154_010 Hb_003020_340--Hb_055154_010 Hb_000147_010 Hb_000147_010 Hb_003020_340--Hb_000147_010 Hb_005356_030 Hb_005356_030 Hb_003020_340--Hb_005356_030 Hb_003480_010 Hb_003480_010 Hb_003020_340--Hb_003480_010 Hb_160814_010 Hb_160814_010 Hb_000002_150--Hb_160814_010 Hb_000002_150--Hb_000147_010 Hb_000002_150--Hb_005356_030 Hb_000002_150--Hb_000925_120 Hb_103452_010 Hb_103452_010 Hb_000002_150--Hb_103452_010 Hb_116783_010 Hb_116783_010 Hb_000925_120--Hb_116783_010 Hb_000925_120--Hb_000147_010 Hb_000925_120--Hb_055154_010 Hb_002809_020 Hb_002809_020 Hb_000925_120--Hb_002809_020 Hb_090510_010 Hb_090510_010 Hb_055154_010--Hb_090510_010 Hb_000800_060 Hb_000800_060 Hb_055154_010--Hb_000800_060 Hb_069151_010 Hb_069151_010 Hb_055154_010--Hb_069151_010 Hb_055154_010--Hb_116783_010 Hb_000147_010--Hb_160814_010 Hb_000147_010--Hb_116783_010 Hb_000705_110 Hb_000705_110 Hb_000147_010--Hb_000705_110 Hb_005356_030--Hb_103452_010 Hb_135673_010 Hb_135673_010 Hb_005356_030--Hb_135673_010 Hb_001006_050 Hb_001006_050 Hb_005356_030--Hb_001006_050 Hb_004116_090 Hb_004116_090 Hb_005356_030--Hb_004116_090 Hb_151094_020 Hb_151094_020 Hb_005356_030--Hb_151094_020 Hb_027242_010 Hb_027242_010 Hb_003480_010--Hb_027242_010 Hb_003480_010--Hb_069151_010 Hb_003480_010--Hb_055154_010 Hb_178252_010 Hb_178252_010 Hb_003480_010--Hb_178252_010 Hb_000057_210 Hb_000057_210 Hb_003480_010--Hb_000057_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0663663 0.0731746 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.128388 0

CAGE analysis