Hb_003023_040

Information

Type -
Description -
Location Contig3023: 79264-79598
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31885: 79128-82496 , PASA_asmbl_31886: 79894-82496 , PASA_asmbl_31887: 79894-82501 , PASA_asmbl_31888: 79894-82658 , PASA_asmbl_31889: 79128-82531 , PASA_asmbl_31891: 79685-82525
cDNA
(Sanger)
(ID:Location)		 013_D05.ab1: 80393-82531 , 026_C06.ab1: 80385-82652 , 027_J18.ab1: 80578-82466 , 043_F10.ab1: 80420-82531 , 053_C01.ab1: 79350-80890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003023_040 0.0 - - -
2 Hb_001310_070 0.1769943031 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
3 Hb_000345_430 0.2022076443 - - 40S ribosomal protein S24A [Hevea brasiliensis]
4 Hb_000258_030 0.2032479148 - - -
5 Hb_015978_070 0.2048065415 - - -
6 Hb_001587_060 0.2062321682 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000009_040 0.2068373685 - - -
8 Hb_001057_050 0.2119618218 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
9 Hb_001405_130 0.2127057163 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
10 Hb_008221_110 0.213669184 - - PREDICTED: diphthamide biosynthesis protein 4 [Jatropha curcas]
11 Hb_000562_080 0.2149275401 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001610_130 0.2181134998 - - 40S ribosomal protein S30 [Medicago truncatula]
13 Hb_000367_170 0.2181450103 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
14 Hb_012305_120 0.219147546 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
15 Hb_004223_200 0.2297764414 - - PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]
16 Hb_001017_060 0.2321851152 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
17 Hb_000122_030 0.2325586228 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
18 Hb_000127_090 0.2362811983 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004807_060 0.2383896635 - - -
20 Hb_014834_140 0.2395100536 - - Uncharacterized protein TCM_015942 [Theobroma cacao]

Gene co-expression network

sample Hb_003023_040 Hb_003023_040 Hb_001310_070 Hb_001310_070 Hb_003023_040--Hb_001310_070 Hb_000345_430 Hb_000345_430 Hb_003023_040--Hb_000345_430 Hb_000258_030 Hb_000258_030 Hb_003023_040--Hb_000258_030 Hb_015978_070 Hb_015978_070 Hb_003023_040--Hb_015978_070 Hb_001587_060 Hb_001587_060 Hb_003023_040--Hb_001587_060 Hb_000009_040 Hb_000009_040 Hb_003023_040--Hb_000009_040 Hb_000122_030 Hb_000122_030 Hb_001310_070--Hb_000122_030 Hb_008221_110 Hb_008221_110 Hb_001310_070--Hb_008221_110 Hb_001057_050 Hb_001057_050 Hb_001310_070--Hb_001057_050 Hb_008725_200 Hb_008725_200 Hb_001310_070--Hb_008725_200 Hb_000127_090 Hb_000127_090 Hb_001310_070--Hb_000127_090 Hb_102156_010 Hb_102156_010 Hb_001310_070--Hb_102156_010 Hb_009659_020 Hb_009659_020 Hb_000345_430--Hb_009659_020 Hb_000345_430--Hb_015978_070 Hb_129204_010 Hb_129204_010 Hb_000345_430--Hb_129204_010 Hb_012305_120 Hb_012305_120 Hb_000345_430--Hb_012305_120 Hb_007520_060 Hb_007520_060 Hb_000345_430--Hb_007520_060 Hb_000345_430--Hb_001587_060 Hb_175976_010 Hb_175976_010 Hb_000258_030--Hb_175976_010 Hb_000258_030--Hb_000127_090 Hb_006995_040 Hb_006995_040 Hb_000258_030--Hb_006995_040 Hb_001017_060 Hb_001017_060 Hb_000258_030--Hb_001017_060 Hb_002284_050 Hb_002284_050 Hb_000258_030--Hb_002284_050 Hb_000258_030--Hb_008221_110 Hb_000367_170 Hb_000367_170 Hb_015978_070--Hb_000367_170 Hb_001575_030 Hb_001575_030 Hb_015978_070--Hb_001575_030 Hb_001610_130 Hb_001610_130 Hb_015978_070--Hb_001610_130 Hb_015978_070--Hb_012305_120 Hb_000419_130 Hb_000419_130 Hb_015978_070--Hb_000419_130 Hb_001587_060--Hb_000009_040 Hb_001587_060--Hb_009659_020 Hb_000236_460 Hb_000236_460 Hb_001587_060--Hb_000236_460 Hb_030565_040 Hb_030565_040 Hb_001587_060--Hb_030565_040 Hb_001587_060--Hb_007520_060 Hb_017711_010 Hb_017711_010 Hb_000009_040--Hb_017711_010 Hb_000009_040--Hb_000236_460 Hb_003058_220 Hb_003058_220 Hb_000009_040--Hb_003058_220 Hb_005224_050 Hb_005224_050 Hb_000009_040--Hb_005224_050 Hb_002293_030 Hb_002293_030 Hb_000009_040--Hb_002293_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.1841 0 0 43.818 10.5925 162.079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
134.558 200.811 24.497 1.02583 0

CAGE analysis