Hb_003023_050

Information

Type -
Description -
Location Contig3023: 79853-82495
Sequence    

Annotation

kegg
ID pop:POPTR_0013s10320g
description hypothetical protein
nr
ID XP_006376156.1
description hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9MWH8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s10320g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31885: 79128-82496 , PASA_asmbl_31886: 79894-82496 , PASA_asmbl_31887: 79894-82501 , PASA_asmbl_31888: 79894-82658 , PASA_asmbl_31889: 79128-82531 , PASA_asmbl_31890: 81331-82640 , PASA_asmbl_31891: 79685-82525
cDNA
(Sanger)
(ID:Location)		 013_D05.ab1: 80393-82531 , 018_N04.ab1: 81884-82531 , 026_C06.ab1: 80385-82652 , 027_J18.ab1: 80578-82466 , 043_F10.ab1: 80420-82531 , 046_K20.ab1: 80621-82466 , 051_C17.ab1: 81947-82640 , 053_C01.ab1: 79350-80890

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003023_050 0.0 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
2 Hb_004055_060 0.0907214718 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
3 Hb_001279_250 0.1060148235 - - PREDICTED: pectate lyase-like [Jatropha curcas]
4 Hb_000580_160 0.109876947 - - Nitrate transporter 1.5 [Morus notabilis]
5 Hb_000052_010 0.1157750342 - - hypothetical protein M569_08416, partial [Genlisea aurea]
6 Hb_012779_110 0.1192819715 - - PREDICTED: uncharacterized protein LOC105650717 [Jatropha curcas]
7 Hb_028365_010 0.1247956974 - - PREDICTED: uncharacterized protein LOC105631661 [Jatropha curcas]
8 Hb_002221_080 0.125487068 - - PREDICTED: uncharacterized protein LOC105639992 [Jatropha curcas]
9 Hb_000861_050 0.1374542758 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
10 Hb_000184_180 0.1440951326 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
11 Hb_006469_060 0.148025404 - - hypothetical protein POPTR_0005s16470g [Populus trichocarpa]
12 Hb_005410_030 0.1574162625 - - glutaredoxin 2 [Hevea brasiliensis]
13 Hb_001266_050 0.1577998794 - - PREDICTED: lipid phosphate phosphatase epsilon 2, chloroplastic-like isoform X2 [Elaeis guineensis]
14 Hb_010166_020 0.1597717676 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
15 Hb_002235_220 0.161237608 - - PREDICTED: pectinesterase 31-like [Jatropha curcas]
16 Hb_001109_120 0.1615163503 - - PREDICTED: acyl-CoA-binding protein-like [Nelumbo nucifera]
17 Hb_000526_020 0.1629629666 - - thioredoxin-like family protein [Hevea brasiliensis]
18 Hb_008557_020 0.1665430097 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
19 Hb_000025_290 0.1666286975 - - Uncharacterized protein TCM_031320 [Theobroma cacao]
20 Hb_000284_010 0.1668886815 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_04974 [Jatropha curcas]

Gene co-expression network

sample Hb_003023_050 Hb_003023_050 Hb_004055_060 Hb_004055_060 Hb_003023_050--Hb_004055_060 Hb_001279_250 Hb_001279_250 Hb_003023_050--Hb_001279_250 Hb_000580_160 Hb_000580_160 Hb_003023_050--Hb_000580_160 Hb_000052_010 Hb_000052_010 Hb_003023_050--Hb_000052_010 Hb_012779_110 Hb_012779_110 Hb_003023_050--Hb_012779_110 Hb_028365_010 Hb_028365_010 Hb_003023_050--Hb_028365_010 Hb_004055_060--Hb_001279_250 Hb_004055_060--Hb_000052_010 Hb_004055_060--Hb_000580_160 Hb_010166_020 Hb_010166_020 Hb_004055_060--Hb_010166_020 Hb_002492_020 Hb_002492_020 Hb_004055_060--Hb_002492_020 Hb_008557_020 Hb_008557_020 Hb_001279_250--Hb_008557_020 Hb_001279_250--Hb_000052_010 Hb_001279_250--Hb_000580_160 Hb_000184_180 Hb_000184_180 Hb_001279_250--Hb_000184_180 Hb_005276_100 Hb_005276_100 Hb_000580_160--Hb_005276_100 Hb_006469_060 Hb_006469_060 Hb_000580_160--Hb_006469_060 Hb_000580_160--Hb_012779_110 Hb_002235_220 Hb_002235_220 Hb_000580_160--Hb_002235_220 Hb_000052_010--Hb_000184_180 Hb_000526_020 Hb_000526_020 Hb_000052_010--Hb_000526_020 Hb_003777_230 Hb_003777_230 Hb_000052_010--Hb_003777_230 Hb_006816_440 Hb_006816_440 Hb_000052_010--Hb_006816_440 Hb_149683_010 Hb_149683_010 Hb_000052_010--Hb_149683_010 Hb_002221_080 Hb_002221_080 Hb_012779_110--Hb_002221_080 Hb_000025_290 Hb_000025_290 Hb_012779_110--Hb_000025_290 Hb_012779_110--Hb_006469_060 Hb_012779_110--Hb_005276_100 Hb_028365_010--Hb_012779_110 Hb_005410_030 Hb_005410_030 Hb_028365_010--Hb_005410_030 Hb_002843_190 Hb_002843_190 Hb_028365_010--Hb_002843_190 Hb_001109_120 Hb_001109_120 Hb_028365_010--Hb_001109_120 Hb_028365_010--Hb_002221_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
600.206 3.47134 2.31928 19.8165 464.235 317.704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1165.26 1105.78 217.464 14.6005 2.06398

CAGE analysis