Hb_003023_060

Information

Type transcription factor
Description TF Family: ERF
Location Contig3023: 100702-101277
Sequence    

Annotation

kegg
ID pop:POPTR_0019s10430g
description POPTRDRAFT_574198; AP2 domain-containing transcription factor family protein
nr
ID XP_002325520.2
description AP2 domain-containing transcription factor family protein [Populus trichocarpa]
swissprot
ID Q9LQ28
description Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1
trembl
ID B9IQB7
description AP2 domain-containing transcription factor family protein OS=Populus trichocarpa GN=POPTR_0019s10430g PE=4 SV=2
Gene Ontology
ID GO:0003677
description ap2 domain-containing transcription factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003023_060 0.0 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
2 Hb_001404_010 0.1505139649 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
3 Hb_031530_010 0.1542397328 - - DWNN domain isoform 2 [Theobroma cacao]
4 Hb_000134_010 0.1589263113 - - -
5 Hb_002097_150 0.1659390313 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
6 Hb_025477_030 0.166163355 transcription factor TF Family: ERF dehydration-responsive element-binding protein 2 [Manihot esculenta]
7 Hb_047833_010 0.1793573281 - - Avr9/Cf-9 rapidly elicited protein [Jatropha curcas]
8 Hb_011416_020 0.1798750111 - - conserved hypothetical protein [Ricinus communis]
9 Hb_167802_010 0.1817777218 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
10 Hb_137612_010 0.1850343578 - - cytochrome P450, putative [Ricinus communis]
11 Hb_082225_010 0.1857792436 - - DWNN domain isoform 2 [Theobroma cacao]
12 Hb_000313_190 0.1868623173 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]
13 Hb_158123_010 0.1869287532 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_094839_010 0.1872340605 - - conserved hypothetical protein [Ricinus communis]
15 Hb_007728_010 0.1874434928 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
16 Hb_010417_120 0.1903804541 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009393_010 0.1913065965 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
18 Hb_009707_010 0.193040671 - - PREDICTED: LOW QUALITY PROTEIN: exocyst complex component EXO70B1-like [Jatropha curcas]
19 Hb_010573_030 0.1940075496 - - conserved hypothetical protein [Ricinus communis]
20 Hb_121913_010 0.1944604681 - - Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_003023_060 Hb_003023_060 Hb_001404_010 Hb_001404_010 Hb_003023_060--Hb_001404_010 Hb_031530_010 Hb_031530_010 Hb_003023_060--Hb_031530_010 Hb_000134_010 Hb_000134_010 Hb_003023_060--Hb_000134_010 Hb_002097_150 Hb_002097_150 Hb_003023_060--Hb_002097_150 Hb_025477_030 Hb_025477_030 Hb_003023_060--Hb_025477_030 Hb_047833_010 Hb_047833_010 Hb_003023_060--Hb_047833_010 Hb_001404_010--Hb_031530_010 Hb_082225_010 Hb_082225_010 Hb_001404_010--Hb_082225_010 Hb_000313_190 Hb_000313_190 Hb_001404_010--Hb_000313_190 Hb_000221_280 Hb_000221_280 Hb_001404_010--Hb_000221_280 Hb_000529_050 Hb_000529_050 Hb_001404_010--Hb_000529_050 Hb_001477_080 Hb_001477_080 Hb_001404_010--Hb_001477_080 Hb_031530_010--Hb_082225_010 Hb_032920_040 Hb_032920_040 Hb_031530_010--Hb_032920_040 Hb_000827_090 Hb_000827_090 Hb_031530_010--Hb_000827_090 Hb_031530_010--Hb_000313_190 Hb_137612_010 Hb_137612_010 Hb_000134_010--Hb_137612_010 Hb_007728_010 Hb_007728_010 Hb_000134_010--Hb_007728_010 Hb_010573_030 Hb_010573_030 Hb_000134_010--Hb_010573_030 Hb_000134_010--Hb_025477_030 Hb_094839_010 Hb_094839_010 Hb_000134_010--Hb_094839_010 Hb_167802_010 Hb_167802_010 Hb_000134_010--Hb_167802_010 Hb_002097_150--Hb_047833_010 Hb_147137_020 Hb_147137_020 Hb_002097_150--Hb_147137_020 Hb_027214_060 Hb_027214_060 Hb_002097_150--Hb_027214_060 Hb_004157_080 Hb_004157_080 Hb_002097_150--Hb_004157_080 Hb_001025_070 Hb_001025_070 Hb_002097_150--Hb_001025_070 Hb_143232_020 Hb_143232_020 Hb_002097_150--Hb_143232_020 Hb_009393_010 Hb_009393_010 Hb_025477_030--Hb_009393_010 Hb_002475_110 Hb_002475_110 Hb_025477_030--Hb_002475_110 Hb_013726_100 Hb_013726_100 Hb_025477_030--Hb_013726_100 Hb_025477_030--Hb_167802_010 Hb_000904_090 Hb_000904_090 Hb_025477_030--Hb_000904_090 Hb_000142_010 Hb_000142_010 Hb_047833_010--Hb_000142_010 Hb_000563_460 Hb_000563_460 Hb_047833_010--Hb_000563_460 Hb_002311_490 Hb_002311_490 Hb_047833_010--Hb_002311_490 Hb_003053_060 Hb_003053_060 Hb_047833_010--Hb_003053_060 Hb_011671_290 Hb_011671_290 Hb_047833_010--Hb_011671_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0461648 7.9764 0.797524 2.31877 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.322091 0.337485 0 0 0

CAGE analysis