Hb_003025_020

Information

Type -
Description -
Location Contig3025: 8097-19187
Sequence    

Annotation

kegg
ID rcu:RCOM_0540370
description WD-repeat protein, putative
nr
ID XP_002525890.1
description WD-repeat protein, putative [Ricinus communis]
swissprot
ID Q9SJW6
description Actin-related protein 2/3 complex subunit 1B OS=Arabidopsis thaliana GN=ARPC1B PE=2 SV=1
trembl
ID B9SIS1
description WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0540370 PE=4 SV=1
Gene Ontology
ID GO:0015629
description actin-related protein 2 3 complex subunit 1a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31893: 11794-12029 , PASA_asmbl_31894: 12660-19302 , PASA_asmbl_31896: 15172-15285 , PASA_asmbl_31897: 19094-19294
cDNA
(Sanger)
(ID:Location)		 022_J14.ab1: 12660-19302

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003025_020 0.0 - - WD-repeat protein, putative [Ricinus communis]
2 Hb_002081_130 0.0665490874 - - serine carboxypeptidase, putative [Ricinus communis]
3 Hb_066182_010 0.0785245924 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
4 Hb_002067_040 0.0932615658 - - dihydrodipicolinate reductase, putative [Ricinus communis]
5 Hb_002149_020 0.0934032751 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
6 Hb_002043_190 0.0934614543 - - rwd domain-containing protein, putative [Ricinus communis]
7 Hb_009838_090 0.0946171435 - - PREDICTED: uncharacterized protein LOC105638421 isoform X2 [Jatropha curcas]
8 Hb_005503_030 0.0968207098 - - PREDICTED: protein SCO1 homolog 1, mitochondrial [Jatropha curcas]
9 Hb_143629_010 0.0972998646 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
10 Hb_003788_050 0.0981455939 - - PREDICTED: interferon-induced guanylate-binding protein 2-like [Jatropha curcas]
11 Hb_001047_100 0.100404387 - - 40S ribosomal protein S18, putative [Ricinus communis]
12 Hb_002805_270 0.1006349131 - - PREDICTED: phytochromobilin:ferredoxin oxidoreductase, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_005618_160 0.1015581246 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
14 Hb_003752_080 0.1023047614 - - PREDICTED: ubiquitin-like-conjugating enzyme ATG10 isoform X1 [Jatropha curcas]
15 Hb_000174_110 0.1027290419 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
16 Hb_000322_050 0.1034257381 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
17 Hb_002233_150 0.1037123714 - - PREDICTED: uncharacterized protein LOC105633093 [Jatropha curcas]
18 Hb_000640_240 0.1040747361 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
19 Hb_009803_040 0.1052617477 - - tetratricopeptide repeat-containing family protein [Populus trichocarpa]
20 Hb_000300_060 0.1054228016 - - PREDICTED: F-box protein SKIP24 [Jatropha curcas]

Gene co-expression network

sample Hb_003025_020 Hb_003025_020 Hb_002081_130 Hb_002081_130 Hb_003025_020--Hb_002081_130 Hb_066182_010 Hb_066182_010 Hb_003025_020--Hb_066182_010 Hb_002067_040 Hb_002067_040 Hb_003025_020--Hb_002067_040 Hb_002149_020 Hb_002149_020 Hb_003025_020--Hb_002149_020 Hb_002043_190 Hb_002043_190 Hb_003025_020--Hb_002043_190 Hb_009838_090 Hb_009838_090 Hb_003025_020--Hb_009838_090 Hb_002081_130--Hb_002043_190 Hb_002081_130--Hb_066182_010 Hb_000300_060 Hb_000300_060 Hb_002081_130--Hb_000300_060 Hb_005993_040 Hb_005993_040 Hb_002081_130--Hb_005993_040 Hb_002391_300 Hb_002391_300 Hb_002081_130--Hb_002391_300 Hb_054865_100 Hb_054865_100 Hb_066182_010--Hb_054865_100 Hb_066182_010--Hb_000300_060 Hb_005276_210 Hb_005276_210 Hb_066182_010--Hb_005276_210 Hb_066182_010--Hb_002149_020 Hb_000640_240 Hb_000640_240 Hb_066182_010--Hb_000640_240 Hb_002272_180 Hb_002272_180 Hb_002067_040--Hb_002272_180 Hb_000322_050 Hb_000322_050 Hb_002067_040--Hb_000322_050 Hb_000076_270 Hb_000076_270 Hb_002067_040--Hb_000076_270 Hb_000429_200 Hb_000429_200 Hb_002067_040--Hb_000429_200 Hb_012490_030 Hb_012490_030 Hb_002067_040--Hb_012490_030 Hb_002609_110 Hb_002609_110 Hb_002149_020--Hb_002609_110 Hb_004440_090 Hb_004440_090 Hb_002149_020--Hb_004440_090 Hb_002149_020--Hb_002391_300 Hb_002149_020--Hb_000300_060 Hb_003005_020 Hb_003005_020 Hb_002149_020--Hb_003005_020 Hb_002043_190--Hb_005993_040 Hb_015746_010 Hb_015746_010 Hb_002043_190--Hb_015746_010 Hb_003126_050 Hb_003126_050 Hb_002043_190--Hb_003126_050 Hb_002233_150 Hb_002233_150 Hb_002043_190--Hb_002233_150 Hb_000041_270 Hb_000041_270 Hb_002043_190--Hb_000041_270 Hb_033843_010 Hb_033843_010 Hb_009838_090--Hb_033843_010 Hb_005503_030 Hb_005503_030 Hb_009838_090--Hb_005503_030 Hb_009838_090--Hb_066182_010 Hb_143629_010 Hb_143629_010 Hb_009838_090--Hb_143629_010 Hb_000327_120 Hb_000327_120 Hb_009838_090--Hb_000327_120 Hb_002685_140 Hb_002685_140 Hb_009838_090--Hb_002685_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.735371 0.234861 0.419626 0.371441 1.28605 0.804299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.762271 0.876122 0.420877 0.595218 0.186974

CAGE analysis